PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g42197.1.p | ||||||||
Common Name | BRADI_3g42197, LOC100837710 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | SRS | ||||||||
Protein Properties | Length: 308aa MW: 31496.4 Da PI: 8.4277 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 214.8 | 2e-66 | 101 | 248 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssa 94 +sgt+sCqdCGnqakkdC h+RCRtCCksrgfdCathvkstWvpaa+rr+r+qq + +++ a + kr+r++ + + s+++ t+ s + Bradi3g42197.1.p 101 GSGTISCQDCGNQAKKDCPHMRCRTCCKSRGFDCATHVKSTWVPAARRRDRHQQSHPSAAG-----APEPFKRPRDS-TGQPSSTTPTTSSGG 187 5799***********************************************9888776444.....46789999997.555666666666888 PP DUF702 95 eskkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 e+++ +++P+evsseavfrcvr+++vd+ +++e+aYqt+vsigGhvfkGiL+d G+++ Bradi3g42197.1.p 188 EQQMVAAGERFPREVSSEAVFRCVRLGGVDEgADAEVAYQTTVSIGGHVFKGILHDLGPDT 248 8999999999*********************8899***********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.1E-60 | 104 | 247 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.5E-27 | 106 | 148 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 7.6E-25 | 197 | 246 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010252 | Biological Process | auxin homeostasis | ||||
GO:0048479 | Biological Process | style development | ||||
GO:0048480 | Biological Process | stigma development |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MAGFPLGGGG GGGHRGRGEQ PPVTTSNPGS EPGSSSAAAA FLYAAAAPRG SFQLWQHPQE 60 QHQHHHHHPF YGGAGASSII RFADDPAVAG SSSSRGRGSS GSGTISCQDC GNQAKKDCPH 120 MRCRTCCKSR GFDCATHVKS TWVPAARRRD RHQQSHPSAA GAPEPFKRPR DSTGQPSSTT 180 PTTSSGGEQQ MVAAGERFPR EVSSEAVFRC VRLGGVDEGA DAEVAYQTTV SIGGHVFKGI 240 LHDLGPDTSL GSGHRAEGSS PPSTAASGGA GAVSSSAVVM DPYPTPGGPY GAYGGGAPFF 300 HGHHHPR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g42197.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010235381.1 | 0.0 | protein SHI RELATED SEQUENCE 2 | ||||
Swissprot | O65517 | 9e-54 | SRS2_ARATH; Protein SHI RELATED SEQUENCE 2 | ||||
TrEMBL | A0A0Q3JLN6 | 0.0 | A0A0Q3JLN6_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G42197.1 | 1e-138 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1354 | 35 | 124 | Representative plant | OGRP1872 | 11 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36260.1 | 2e-49 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g42197.1.p |
Entrez Gene | 100837710 |
Publications ? help Back to Top | |||
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