PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g41950.1.p
Common NameBRADI_3g41950, LOC100825220
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 291aa    MW: 30821.9 Da    PI: 7.3771
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g41950.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26e-13108153555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h e+Er+RR+r+N  f  Lr  +P+       +++Ka+ L  Av YI++L+
  Bradi3g41950.1.p 108 HVEAERQRRERLNRLFCDLRAAVPTV-----SRMDKASLLADAVSYISQLR 153
                       889**********************6.....4*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.621103152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.05E-15108167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.76E-12108156No hitNo description
Gene3DG3DSA:4.10.280.108.5E-15108165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-10108152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-11109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDELVAVFPA GGSSSCSPPS AASFFSAASP RPRPPPVIEL VSCDVPEQWL TNDDVLDLDN  60
NNNNYHLPWA CSAAGSLGLP AMATSMNRSG RGRKNPRPRP SDGPAVGHVE AERQRRERLN  120
RLFCDLRAAV PTVSRMDKAS LLADAVSYIS QLRARVDRLE SEAQAQAAAS ARQKKALQAV  180
AVGQDEERLE VRMVGKEREV AALRLVTTAS SGAAPARLMA ALRALDLPVQ HACVSRVHGG  240
GAPTVVQDAV VDVPAAGMRD EGRLRAALLR GLQLQQQGGA DPCSIDILDD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-16106162763Transcription factor MYC2
5gnj_B3e-16106162763Transcription factor MYC2
5gnj_E3e-16106162763Transcription factor MYC2
5gnj_F3e-16106162763Transcription factor MYC2
5gnj_G3e-16106162763Transcription factor MYC2
5gnj_I3e-16106162763Transcription factor MYC2
5gnj_M3e-16106162763Transcription factor MYC2
5gnj_N3e-16106162763Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112117RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g41950.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572476.10.0transcription factor bHLH14
TrEMBLI1I9630.0I1I963_BRADI; Uncharacterized protein
STRINGBRADI3G41950.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Representative plantOGRP1106048
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.12e-18bHLH family protein