PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g41547.1.p | ||||||||
Common Name | BRADI_3g41547, LOC100844898 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 148aa MW: 16255.3 Da PI: 10.2931 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.5 | 1.2e-11 | 77 | 122 | 6 | 55 |
AP2 6 VrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 V w++ +g++ AeI+dp+ + +r++lg f tae+ a++aa+ +++g Bradi3g41547.1.p 77 V-WRRLWGKYSAEIWDPV----NaRRVWLGIFTTAEDTFSAYDAAAIRFKG 122 5.6777**********64....56***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.930.10 | 6.2E-5 | 6 | 55 | No hit | No description |
SuperFamily | SSF55681 | 8.78E-5 | 19 | 60 | No hit | No description |
SMART | SM00380 | 2.7E-9 | 73 | 137 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.081 | 73 | 134 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-12 | 75 | 123 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.7E-16 | 75 | 123 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.30E-15 | 82 | 132 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MNSHQRNLVK IKDYSIVAPD TKNPLSDPYP SNLMFQTSVG PTGLSVGYMR PAPAPASDVQ 60 QRAEEQQKAM RRRNRAVWRR LWGKYSAEIW DPVNARRVWL GIFTTAEDTF SAYDAAAIRF 120 KGPGKAKLAA TNDAVATSGS PGDQELS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g41547.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003572462.1 | 1e-106 | ethylene-responsive transcription factor 8 | ||||
TrEMBL | A0A0Q3IEY6 | 1e-104 | A0A0Q3IEY6_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G41546.1 | 1e-101 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03800.1 | 3e-14 | ERF domain protein 10 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g41547.1.p |
Entrez Gene | 100844898 |