PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g41543.2.p
Common NameBRADI_3g41543
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 290aa    MW: 30868.2 Da    PI: 6.6804
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g41543.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.2e-20127177155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       ++y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa+a++ a+++++g
  Bradi3g41543.2.p 127 PRYRGVRRRP-WGKWAAEIRDPV----KaARVWLGTFSTAEDAARAYDTAALRFKG 177
                       68********.**********64....55************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.97E-28127188No hitNo description
PfamPF008474.9E-13127177IPR001471AP2/ERF domain
SMARTSM003801.6E-36128192IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-21128188IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-31128187IPR001471AP2/ERF domain
PROSITE profilePS5103225.765128186IPR001471AP2/ERF domain
PRINTSPR003671.1E-11129140IPR001471AP2/ERF domain
PRINTSPR003671.1E-11151167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MSPLPLPPPP ERRRRGDDGG GEYYYHGEAP EVVGEAAQGG GGRRRSCAEH ELDVMVAALT  60
HVISSGREPL AAAAGAVFEG AVSRQQVTTC QQFYSVAAPP LMARPASVAA STASEEQRAE  120
EQHAETPRYR GVRRRPWGKW AAEIRDPVKA ARVWLGTFST AEDAARAYDT AALRFKGPDK  180
AKLNFPLSSQ PLAGVSSHVA PPPRRRPAAA SIDDVASGPS GQEELSCFFP DIGRYAHILQ  240
SGGGDDDVLR DVHQHVIVGA GSGSAPPGHY SEEEEHRPPS TWREKSAGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-21124187164ATERF1
3gcc_A8e-21124187164ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g41543.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1205274e-33AC120527.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0011J22 map R10571S, complete sequence.
GenBankAC1478124e-33AC147812.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0073K23 map near R10571S, complete sequence.
GenBankAP0149674e-33AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126194e-33CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755421.11e-168ethylene-responsive transcription factor ERF110
TrEMBLA0A0Q3HZZ70.0A0A0Q3HZZ7_BRADI; Uncharacterized protein
STRINGBRADI3G41543.11e-167(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5020322
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.11e-22ERF family protein