PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g41500.1.p
Common NameBRADI_3g41500, LOC100824109
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CO-like
Protein Properties Length: 545aa    MW: 58585.2 Da    PI: 5.5574
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g41500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.42.3e-0662103237
          zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                       +++ C+ ++e  + l+C+ +   lC  C  + H        H
  Bradi3g41500.1.p  62 QQWPCDYCGEAAAALHCRADAARLCVACDRHVHAAnalsrkH 103
                       7899*******9******************999545555555 PP
2CCT63.28.1e-22491535145
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                       R+ a++RY+eKrk+R++eK+irYesRK +A++R+RvKGrFvk++e
  Bradi3g41500.1.p 491 RDSAMQRYREKRKNRRYEKHIRYESRKLRADTRKRVKGRFVKSNE 535
                       899***************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.8461108IPR000315B-box-type zinc finger
SMARTSM003362.3E-1161108IPR000315B-box-type zinc finger
CDDcd000218.65E-964107No hitNo description
PfamPF062033.3E-16491533IPR010402CCT domain
PROSITE profilePS5101715.338491533IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MPSLDGFGVW IASRASAAAE QKEKKLISLS EALSLSAFDL TSPPSPLVRA CVVEMKEGGG  60
RQQWPCDYCG EAAAALHCRA DAARLCVACD RHVHAANALS RKHVRAPLCA ACAARPAAAA  120
RLASGSSDPE FLCSACDDDG ACEGAGAARV PVEGFSGCPA ASELAASWGL DLLHPLPTDG  180
CGGGGGIGRG EQEDEEDALF FSSLDYSMLV DPEMRDLYVP CDPPDSGGRP LKGEALCQQL  240
AEMARRETQS HPPPPPQQQQ YTPDLSPRTP RRSSAGPEKQ HQQPPPLPQE PPFPYTSLLM  300
NMMPPDNLAA GNNDRLRDDE AGQQLQWEFT APSSVPPTQI WDFNLGRSRN HNENSALEVE  360
FGSNNGGFMI KSYNDMLKEI SSGTTKDLED IYDSGYCAAA EDIMSTNICQ LSSKNVSTAS  420
NKRKVSSCTS TIDGPTTSGN YVPTSGPLGS SSQDRGAALA REISFGEQTI VPTGADRPTT  480
RIDSETLAQN RDSAMQRYRE KRKNRRYEKH IRYESRKLRA DTRKRVKGRF VKSNEALNAS  540
GNGG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g41500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3559710.0AK355971.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1028G17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574843.20.0zinc finger protein CONSTANS-LIKE 14
TrEMBLA0A0Q3IEY20.0A0A0Q3IEY2_BRADI; Uncharacterized protein
STRINGBRADI3G41500.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45042026
Representative plantOGRP5453813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.14e-18B-box type zinc finger protein with CCT domain