PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g41470.1.p | ||||||||
Common Name | BRADI_3g41470, LOC100823190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 252aa MW: 27088.4 Da PI: 9.5956 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 85.3 | 1.2e-26 | 24 | 162 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdke 91 lppGfrF+Ptdeelv +yL++k+ g +l++ v++++ ++++++Pwd+ + ++e e yfF+ r +++ +r a++sg Wk g++++ Bradi3g41470.1.p 24 LPPGFRFRPTDEELVLQYLRRKALGFPLPA-AVVPDLpRLHSLDPWDIL-TPGESEGEKYFFALRPSAA------RRtAAASGWWKPEGRERA 108 79****************************.7899998**********6.445566799*****98864......3436679*********** PP NAM 92 vlsk....kgelvglkktLvfy............kgrapkge......ktdWvmheyrl 128 v++ +++lvg+k+ L+f + ++ + Wvmheyrl Bradi3g41470.1.p 109 VVAVcrsgRSHLVGVKRALAFVprahrgkkgsssS-----SSspapalTAGWVMHEYRL 162 *99888888889**********9887665333321.....21344445789******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.15E-35 | 22 | 190 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 38.591 | 24 | 190 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-20 | 25 | 162 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MESSPVVLVR QGQGEEQAEV LRALPPGFRF RPTDEELVLQ YLRRKALGFP LPAAVVPDLP 60 RLHSLDPWDI LTPGESEGEK YFFALRPSAA RRTAAASGWW KPEGRERAVV AVCRSGRSHL 120 VGVKRALAFV PRAHRGKKGS SSSSSSPAPA LTAGWVMHEY RLALPPHHKN GCYLAQSGSE 180 EWVVCRVFRR DTRPSSLSRR HTPAGHATMP MPASPSTSSS SSLSSSTSSC VTSGGSGSSS 240 DDDDLQEEAS S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-26 | 23 | 192 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-26 | 23 | 192 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-26 | 23 | 192 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-26 | 23 | 192 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-26 | 23 | 192 | 19 | 170 | NAC domain-containing protein 19 |
3swm_B | 6e-26 | 23 | 192 | 19 | 170 | NAC domain-containing protein 19 |
3swm_C | 6e-26 | 23 | 192 | 19 | 170 | NAC domain-containing protein 19 |
3swm_D | 6e-26 | 23 | 192 | 19 | 170 | NAC domain-containing protein 19 |
3swp_A | 6e-26 | 23 | 192 | 19 | 170 | NAC domain-containing protein 19 |
3swp_B | 6e-26 | 23 | 192 | 19 | 170 | NAC domain-containing protein 19 |
3swp_C | 6e-26 | 23 | 192 | 19 | 170 | NAC domain-containing protein 19 |
3swp_D | 6e-26 | 23 | 192 | 19 | 170 | NAC domain-containing protein 19 |
4dul_A | 6e-26 | 23 | 192 | 16 | 167 | NAC domain-containing protein 19 |
4dul_B | 6e-26 | 23 | 192 | 16 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g41470.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010235343.1 | 1e-180 | NAC domain-containing protein 83 | ||||
TrEMBL | I1I8Z8 | 1e-179 | I1I8Z8_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G41470.1 | 1e-180 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11818 | 31 | 40 | Representative plant | OGRP14562 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.2 | 6e-30 | NAC domain containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g41470.1.p |
Entrez Gene | 100823190 |