PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g41250.1.p | ||||||||
Common Name | BRADI_3g41250, LOC100844798 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | SBP | ||||||||
Protein Properties | Length: 426aa MW: 44358.1 Da PI: 7.4404 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.6 | 2.3e-40 | 120 | 196 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls++++yhrrhkvCe+hsk+pvv+v+g+ rfCqqCsrfh l+efDe+krsCr+rL++hn+rrrk+q+ Bradi3g41250.1.p 120 CAVDGCRADLSRCRDYHRRHKVCEAHSKTPVVAVAGRDMRFCQQCSRFHLLTEFDETKRSCRKRLDGHNRRRRKPQP 196 **************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.1E-34 | 111 | 181 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.855 | 117 | 194 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 7.19E-38 | 118 | 199 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.2E-30 | 120 | 193 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MDWDLKMPAA GAGAAWDLAE LEQGGGGGGP SADGIAAPAA AAGGGGRAEC SVDLKLGGLG 60 ESGGGQAQAQ AQDSSTRGGK APVAASAPAP GKRPRAAAGS SSSSGGGGGG GGQGQQCPSC 120 AVDGCRADLS RCRDYHRRHK VCEAHSKTPV VAVAGRDMRF CQQCSRFHLL TEFDETKRSC 180 RKRLDGHNRR RRKPQPDPMN SASFMTSQQG TRFSPFPNPR PEQSWPGIIK TEESPYYAHQ 240 IPIGISNRQH FGGSTSTYAK EGRRFPFLQE GEINFATGVT LEPSVCQPHP RTAAPPDSSG 300 SSKMFSDGLT PVLDSDCALS LLSAPANSSG IDVGRMVQVQ QNEHIPIAQP LVSSLQFSSS 360 SWFARSQAAT GAVPPTGFSC PVVENEQLNT VLSSDNNEMN YSGIFHVGGE GSSDGAPPSL 420 PFTWQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-26 | 120 | 193 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 176 | 193 | KRSCRKRLDGHNRRRRKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g41250.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003574825.1 | 0.0 | squamosa promoter-binding-like protein 16 | ||||
Swissprot | Q6YZE8 | 1e-158 | SPL16_ORYSJ; Squamosa promoter-binding-like protein 16 | ||||
TrEMBL | I1I8X2 | 0.0 | I1I8X2_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G41250.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1755 | 37 | 95 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 2e-41 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g41250.1.p |
Entrez Gene | 100844798 |