PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g40343.1.p | ||||||||
Common Name | BRADI_3g40343 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 213aa MW: 23318.4 Da PI: 6.5224 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.4 | 8.6e-14 | 27 | 76 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 g +GVr++ + rW+AeIr p++ r r ++g+f +e+Aa a++a +++g Bradi3g40343.1.p 27 GLRGVRQRQ-WSRWAAEIRLPRT---RDRLWIGTFQHPEQAALAYDATLYCFYG 76 579***999.**********965...4********************9888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 18.966 | 27 | 90 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.9E-15 | 28 | 80 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.6E-8 | 28 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-6 | 28 | 39 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.66E-19 | 29 | 92 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.4E-21 | 29 | 90 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.8E-18 | 29 | 96 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-6 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MGQAAGRATV RRRGGGPSSL APRKNLGLRG VRQRQWSRWA AEIRLPRTRD RLWIGTFQHP 60 EQAALAYDAT LYCFYGDEKQ LPPQRVYNFP AAPLPYVPPG KHGNLSNENI KAIAEKHAVD 120 LYNLVFAKNQ TPPPPPAPVK KEAAPAAAPP AAAYLPPPPP PTPIMAEHAV DYGAAPPPDV 180 GGYFDMDDDI VYSYNVEEIG EVFVDDDEPW ML* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g40343.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010236752.1 | 4e-87 | ethylene-responsive transcription factor ERF015 | ||||
TrEMBL | A0A0Q3HZI4 | 1e-152 | A0A0Q3HZI4_BRADI; Uncharacterized protein | ||||
STRING | Sb07g027250.1 | 1e-32 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5444 | 25 | 55 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31060.1 | 5e-23 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g40343.1.p |