PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g40240.1.p | ||||||||
Common Name | BRADI_3g40240, LOC100826889 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | SBP | ||||||||
Protein Properties | Length: 1127aa MW: 122963 Da PI: 7.3092 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.6 | 2.4e-40 | 187 | 264 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adl++ak+yhrrhkvCe+hsk+++++v ++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ Bradi3g40240.1.p 187 MCQVDDCRADLTSAKDYHRRHKVCEIHSKTTKAVVGHQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 264 6**************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 8.5E-34 | 180 | 249 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.923 | 185 | 262 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.88E-37 | 186 | 265 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.8E-29 | 188 | 261 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1127 aa Download sequence Send to blast |
MQREVGPQVA SPLYLHHQIQ PLPPHAVAAA PKKRGNPWPA SAEGAAAGSA GAGNWNPAMW 60 DWDSRAFTAR PSSDALRLGA GAQNHHHHNH HQQQQRQPAA MAAEAQQRQG PGGLSLQLAT 120 REEASVAMDV SPTAIMSSSP SPPAAPAHEQ AARPSKKVRS ESPGTGSGGG GNGGGGSSGN 180 GGGSYPMCQV DDCRADLTSA KDYHRRHKVC EIHSKTTKAV VGHQMQRFCQ QCSRFHPLSE 240 FDEGKRSCRR RLAGHNRRRR KTQPTDVASQ LLLPDNQENA GNRTQDIVNL ITVIARLQGG 300 NVGKLPSIPP IPDKDNLVQI ISKINSINTA NALGKSPPSE VIDLNASHGQ QQDAVQKATN 360 VIDKQAVPST MDLLTVLSGG NGASTPETNT SQSQGSSDSS GNNKSKSHST EPAYVVNSHE 420 KSIRAFPAAG VIRSNSPHDS PPEMYKQPDR DARPFLSLQL FGSTYDDIPA KMDTANKYLS 480 SESSNPMDER SPSSSPPVTH TFFPIRSAND GITHPRAGDY GEDAATVENS TTRAWCAPPL 540 ELFKDSERPT ENGSPPNLTY QSCYASTSGS DHSPSTSNSD GQDRTGRIIF KLFGKEPGSI 600 PGNLRDEVVN WLKHSPTEME GYIRPGCLVL SMYLSMPAIA WDELEENLLH RVNTLIQGSD 660 SDFWRNGRFL VRSDNQLVSY KDGTTRLSKS WRTWNTPELT LVTPIAVVGG RKSSLILKGR 720 NLTIPGTQIH CTTEGKYISK EVLCSAYPGT IYDDSGVETF NLPGEPNLIL GRCFIEVENR 780 FRGNSFPVIF ANSSICQELR NLEAELEDSR FPDVSSEDQV DDTRRLKPRD QVLHFLNELG 840 WLFQKAAACI PSTKSDVSDS ELIQFSTARF RYLLLFSNER DWCSLTKTLL DILSKRSLVS 900 DELSQETLEM LSEIHLLNRA VKRKSRRMVH LLVQFVVICP DNSKLYPFLP NYPGPGGLTP 960 LHLAASIDDA EGVVDALTDD PQQIGLNCWH SVLDDDGQSP EAYAKFRNND SYNELVAQKL 1020 VDKKNSQVTI VLNKGEICMD QPGNGGGNNA SGIQAMGIKS CSQCAILESG LLSRPMHSRG 1080 LLARPYIHSM LAIAAVCVCV CVFMRALLRF NSGRSFKWER LDFGTS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-32 | 176 | 261 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 164 | 176 | TGSGGGGNGGGGS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00155 | DAP | Transfer from AT1G20980 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g40240.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003574766.1 | 0.0 | squamosa promoter-binding-like protein 15 isoform X1 | ||||
Swissprot | A2YX04 | 0.0 | SPL15_ORYSI; Squamosa promoter-binding-like protein 15 | ||||
Swissprot | Q6Z8M8 | 0.0 | SPL15_ORYSJ; Squamosa promoter-binding-like protein 15 | ||||
TrEMBL | I1I8J3 | 0.0 | I1I8J3_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G40240.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5456 | 38 | 53 | Representative plant | OGRP7138 | 11 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20980.1 | 0.0 | squamosa promoter binding protein-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g40240.1.p |
Entrez Gene | 100826889 |