PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g40085.1.p
Common NameBRADI_3g40085, LOC100837894
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 373aa    MW: 41109.2 Da    PI: 6.7676
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g40085.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1645.4e-51371721128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                       lppGfrFhPtdeel+++yL++k+ +++      +++ ++i+evd++++ePw Lp ++  ++e+ewyfFs rd+ky+tg r+nrat +gyWkat
  Bradi3g40085.1.p  37 LPPGFRFHPTDEELITFYLAPKAFNSSndndsnFSAVDFIAEVDLNRCEPWALPeSARMGGEREWYFFSLRDRKYPTGLRTNRATGAGYWKAT 129
                       79********************98888666666555568***************433345788****************************** PP

               NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       gkd+ev+++ +g+l+g+kktLvfy+grap+g+k++Wv+heyrl
  Bradi3g40085.1.p 130 GKDREVVCAaTGALIGMKKTLVFYEGRAPRGHKSKWVLHEYRL 172
                       ******99878999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-6126195IPR003441NAC domain
PROSITE profilePS5100557.89237195IPR003441NAC domain
PfamPF023652.1E-2638172IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MHQHQHPAAA AMGAEALWDM LSEDMAAAAA AAAEHGLPPG FRFHPTDEEL ITFYLAPKAF  60
NSSNDNDSNF SAVDFIAEVD LNRCEPWALP ESARMGGERE WYFFSLRDRK YPTGLRTNRA  120
TGAGYWKATG KDREVVCAAT GALIGMKKTL VFYEGRAPRG HKSKWVLHEY RLDGDFAADR  180
RSCKEEWVVC RILHKTVDQY SSKMMEMRMM SPYHHCYHPM SHHHHPSFVF QDAPPVPFPN  240
PSGQLPVPFL HHHHDLIPNL QQPSPLTTQH HHQPQAADKN SSSNNGGFPV PAAAAACIQD  300
QQPDNNTAPY FPFPSLASAV TVAAKAGPLP GVNAAGPQEL LPPTWPLDNF LQHGIATYLY  360
ETGPPAGAPR DA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-473719520168NAC domain-containing protein 19
3swm_B1e-473719520168NAC domain-containing protein 19
3swm_C1e-473719520168NAC domain-containing protein 19
3swm_D1e-473719520168NAC domain-containing protein 19
3swp_A1e-473719520168NAC domain-containing protein 19
3swp_B1e-473719520168NAC domain-containing protein 19
3swp_C1e-473719520168NAC domain-containing protein 19
3swp_D1e-473719520168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g40085.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572371.30.0protein CUP-SHAPED COTYLEDON 3
SwissprotQ9S8514e-79NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A0Q3HZE50.0A0A0Q3HZE5_BRADI; Uncharacterized protein
STRINGMLOC_13932.11e-140(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112373341
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.12e-77NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]