PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g40060.2.p
Common NameBRADI_3g40060, LOC100823285
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 604aa    MW: 64151.2 Da    PI: 7.7002
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g40060.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.99.4e-082374445
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT..........TTS-HHHHHHHHH CS
   Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg..........kgRtlkqcksrwq 45
                      W t E++ll+++v+++Gg +W+++a+++            + t+++c++r++
  Bradi3g40060.2.p 23 WGTLEELLLACLVNRHGGACWEKVAEELRarvpaaaaavARFTPESCRLRFR 74
                      9999************************988888888876668888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.0E-41979IPR001005SANT/Myb domain
PfamPF002495.0E-72374IPR001005SANT/Myb domain
CDDcd001670.007762350No hitNo description
Gene3DG3DSA:1.10.10.604.1E-42374IPR009057Homeodomain-like
PROSITE profilePS500906.0172377IPR017877Myb-like domain
Gene3DG3DSA:1.20.920.102.3E-13246363IPR001487Bromodomain
SMARTSM002972.2E-5248365IPR001487Bromodomain
SuperFamilySSF473707.2E-13255361IPR001487Bromodomain
PfamPF004395.2E-8263350IPR001487Bromodomain
PROSITE profilePS500149.49263346IPR001487Bromodomain
CDDcd043692.62E-11266360No hitNo description
Gene3DG3DSA:1.20.920.102.3E-13416434IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MADGSNDPDD AAPDSPAAGG EIWGTLEELL LACLVNRHGG ACWEKVAEEL RARVPAAAAA  60
VARFTPESCR LRFRLIRRRF AAGDAEADGE ELVAAAASCM EELRKLRVAE LRREVERHDL  120
SIGALESKVK RLKEEREKSL SAVSGETTPA SEEEQEEAMN ESPEEAGGEN GVSGADGHAA  180
VEDEDEPDAG AVKEEEENAS GESVAAPKEA DAEEKESSDV QSSASPSKRR LRKVGGEALS  240
SSASAPLPAA EAEPLLAFLE SVRASKSGSV FERRLESQEC GKYRSTIRCH VDLEMIRSKL  300
ESGGPTATTG KGGSPCYYTS ASEFYRDLLL LCANALVFFP RGSMEQAAAA RTRALVSKRI  360
SGSLPGGAAG KKPKPEAEAE GSLMEKSTPI MVSRKRSSIA KAAANAGKEE KVEKADDTDE  420
EEEQDEEEEE DKKKKRGSAS GRTLRSSKTR EPAMNGSPVG RRTRSKGSAA AAAAEASKKP  480
DKKSGGRGKA EAAGEGGVVK KRNAVDFLNR MKQSSSQSTE RVSLLETLKL SATEQTEEKK  540
AGRGKDNGSS SSSRRSAAAE TPPSRGRRNV GRPPKRAAAP PSPPPPKRAK AEDRPATRRR  600
GRK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g40060.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574754.10.0nuclear receptor corepressor 2
TrEMBLA0A2K2D2800.0A0A2K2D280_BRADI; Uncharacterized protein
STRINGBRADI3G40060.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.12e-18DNA-binding bromodomain-containing protein