PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi3g40060.1.p | ||||||||
Common Name | BRADI_3g40060, LOC100823285 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 624aa MW: 65621.7 Da PI: 7.7001 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.9 | 9.8e-08 | 23 | 74 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT..........TTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg..........kgRtlkqcksrwq 45 W t E++ll+++v+++Gg +W+++a+++ + t+++c++r++ Bradi3g40060.1.p 23 WGTLEELLLACLVNRHGGACWEKVAEELRarvpaaaaavARFTPESCRLRFR 74 9999************************988888888876668888888887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.0E-4 | 19 | 79 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-4 | 23 | 74 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.2E-7 | 23 | 74 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00808 | 23 | 50 | No hit | No description |
PROSITE profile | PS50090 | 6.017 | 23 | 77 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.20.920.10 | 3.0E-13 | 246 | 385 | IPR001487 | Bromodomain |
SMART | SM00297 | 2.2E-5 | 248 | 365 | IPR001487 | Bromodomain |
SuperFamily | SSF47370 | 7.59E-13 | 255 | 361 | IPR001487 | Bromodomain |
Pfam | PF00439 | 5.5E-8 | 263 | 350 | IPR001487 | Bromodomain |
PROSITE profile | PS50014 | 9.49 | 263 | 346 | IPR001487 | Bromodomain |
CDD | cd04369 | 2.76E-11 | 266 | 360 | No hit | No description |
Gene3D | G3DSA:1.20.920.10 | 3.0E-13 | 437 | 454 | IPR001487 | Bromodomain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 624 aa Download sequence Send to blast |
MADGSNDPDD AAPDSPAAGG EIWGTLEELL LACLVNRHGG ACWEKVAEEL RARVPAAAAA 60 VARFTPESCR LRFRLIRRRF AAGDAEADGE ELVAAAASCM EELRKLRVAE LRREVERHDL 120 SIGALESKVK RLKEEREKSL SAVSGETTPA SEEEQEEAMN ESPEEAGGEN GVSGADGHAA 180 VEDEDEPDAG AVKEEEENAS GESVAAPKEA DAEEKESSDV QSSASPSKRR LRKVGGEALS 240 SSASAPLPAA EAEPLLAFLE SVRASKSGSV FERRLESQEC GKYRSTIRCH VDLEMIRSKL 300 ESGGPTATTG KGGSPCYYTS ASEFYRDLLL LCANALVFFP RGSMEQAAAA RTRALVSKRI 360 SGSLPGGAAG KASAAAAAAA AGGGGSADGG KKPKPEAEAE GSLMEKSTPI MVSRKRSSIA 420 KAAANAGKEE KVEKADDTDE EEEQDEEEEE DKKKKRGSAS GRTLRSSKTR EPAMNGSPVG 480 RRTRSKGSAA AAAAEASKKP DKKSGGRGKA EAAGEGGVVK KRNAVDFLNR MKQSSSQSTE 540 RVSLLETLKL SATEQTEEKK AGRGKDNGSS SSSRRSAAAE TPPSRGRRNV GRPPKRAAAP 600 PSPPPPKRAK AEDRPATRRR GRK* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi3g40060.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003574754.1 | 0.0 | nuclear receptor corepressor 2 | ||||
TrEMBL | I1I8H1 | 0.0 | I1I8H1_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G40060.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3181 | 26 | 48 | Representative plant | OGRP3805 | 11 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G44430.1 | 2e-18 | DNA-binding bromodomain-containing protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi3g40060.1.p |
Entrez Gene | 100823285 |