PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g40030.2.p | ||||||||
Common Name | BRADI_3g40030, LOC100836973 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | SBP | ||||||||
Protein Properties | Length: 392aa MW: 40509.6 Da PI: 9.0813 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.9 | 2.2e-41 | 80 | 155 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegCe+dl+ k y+ rhkvC++h+k+p v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrr++ Bradi3g40030.2.p 80 RCQVEGCEVDLTASKGYYCRHKVCSMHAKSPRVVVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRRP 155 6*************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 8.3E-34 | 73 | 142 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.282 | 78 | 155 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.57E-39 | 79 | 158 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.5E-32 | 81 | 154 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MEIGSGGGGG SAVAGGGDGG GGGDDQLRHG LQFGKKIYFE DSSSGGSSSG GGGANAASSS 60 SKPAASGGGK KGKGSAAPPR CQVEGCEVDL TASKGYYCRH KVCSMHAKSP RVVVAGLEQR 120 FCQQCSRFHQ LPEFDQGKRS CRRRLAGHNE RRRRPPAGPL ASRYGRLAAS FEESGRFRSY 180 LLDFSYPRVP SSVRDAWPAV RPGYRMPSEV QWQGNLEPRA QSGAAMGYGG HAYSSHGFPS 240 PGLPPGGCLA GVAADSSCAL SLLSTQPWDT TTHGASHDHR SAAMSAAAAS FDGNPVAVAP 300 SVMAGNYLPP PANPWSGSRG HEGGRNVPPD PQLPHDVPLH EVHPAGSSQQ GHFSGELELA 360 LQGNRPAAPG PRYGAGRSTF DHPGSSTNWS Q* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 8e-30 | 74 | 154 | 4 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g40030.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF447877 | 1e-166 | KF447877.1 Triticum aestivum squamosa promoter-binding-like protein 17 (SPL17) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014757049.1 | 0.0 | squamosa promoter-binding-like protein 14 isoform X1 | ||||
Swissprot | Q7EXZ2 | 1e-132 | SPL14_ORYSJ; Squamosa promoter-binding-like protein 14 | ||||
TrEMBL | I1I8G8 | 0.0 | I1I8G8_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G40030.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2527 | 37 | 87 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 3e-45 | squamosa promoter binding protein-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g40030.2.p |
Entrez Gene | 100836973 |