PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g39820.2.p

Common Name

BRADI_3g39820, LOC100833406

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

C2H2

Protein Properties

Length: 438aa MW: 47783.2 Da PI: 6.498

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g39820.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.6	4.7e-05	262	281	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Bradi3g39820.2.p 262 FSCPVCAKTFNRYNNMQMHM 281 89*****************9 PP
2	zf-C2H2	12.5	0.00046	348	368	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +Cgk F k + ++H +++ Bradi3g39820.2.p 348 CRKCGKAFAVKGDWRTHEKNC 368 *****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.77E-5	257	284	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.3E-6	262	281	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.159	262	289	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.14	262	284	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	264	284	IPR007087	Zinc finger, C2H2
SMART	SM00355	220	309	341	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	2.99E-6	328	366	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.2E-5	333	366	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.621	346	366	IPR007087	Zinc finger, C2H2
SMART	SM00355	82	346	366	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	220	372	395	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MEDPYASFLK NVNPYYYYCT SSFPTTAPPA HPFPPYAASL YPASMAAAAA PHHNHYPSFH 60 QNPPPEQPRY HYGNTAMAPA PPSPPLREAL PLLSLSPTRA SARRRHVDDF DCSDSENDDC 120 YTPQDHHHQA APAARAPLFA DLNCVPSCCD DGDGDPMDVE AAAWPADDAA VALRIGLPAG 180 SAEADLLSAL SARATAAGGA EAEMEDDDED EFKASGGHGQ EQEEVPLGYF SSWAAGAPVG 240 RLNKGQYWIP TPTQILMGPT QFSCPVCAKT FNRYNNMQMH MWGHGSQYRK GPESLRGIQP 300 TAMLRLPCYC CAQGCRNNID HPRAKPLKDF RTLQTHYKRK HGLKPFLCRK CGKAFAVKGD 360 WRTHEKNCGR LWYCLCGSEF KHKRSLKDHA RAFGHGHGAA FGCGGNADAD ADGFFDEDDE 420 GAVSEIEHDG GGRPSMR*

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MEDPYASFLK NVNPYYYYCT SSFPTTAPPA HPFPPYAASL YPASMAAAAA PHHNHYPSFH  60
QNPPPEQPRY HYGNTAMAPA PPSPPLREAL PLLSLSPTRA SARRRHVDDF DCSDSENDDC  120
YTPQDHHHQA APAARAPLFA DLNCVPSCCD DGDGDPMDVE AAAWPADDAA VALRIGLPAG  180
SAEADLLSAL SARATAAGGA EAEMEDDDED EFKASGGHGQ EQEEVPLGYF SSWAAGAPVG  240
RLNKGQYWIP TPTQILMGPT QFSCPVCAKT FNRYNNMQMH MWGHGSQYRK GPESLRGIQP  300
TAMLRLPCYC CAQGCRNNID HPRAKPLKDF RTLQTHYKRK HGLKPFLCRK CGKAFAVKGD  360
WRTHEKNCGR LWYCLCGSEF KHKRSLKDHA RAFGHGHGAA FGCGGNADAD ADGFFDEDDE  420
GAVSEIEHDG GGRPSMR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g39820.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF626940	1e-167	EF626940.1 Oryza sativa (indica cultivar-group) WIP4 (WIP4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003572359.1	0.0	zinc finger protein WIP2
Swissprot	Q9SVY1	1e-115	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A0Q3JKN7	0.0	A0A0Q3JKN7_BRADI; Uncharacterized protein
STRING	BRADI3G39820.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170
Representative plant	OGRP410	15	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-103	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Bradi3g39820.2.p
Entrez Gene	100833406

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]