PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g39340.2.p
Common NameBRADI_3g39340, LOC100825419
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 640aa    MW: 68744 Da    PI: 7.4818
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g39340.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.55e-32273329259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +DgynWrKYGqK+vk+s++prsYY+C++++Cpvkkkver++ d++++ei+Y+g+Hnh+
  Bradi3g39340.2.p 273 EDGYNWRKYGQKQVKNSDHPRSYYKCSHPNCPVKKKVERCQ-DGHITEIVYKGSHNHP 329
                       8****************************************.***************7 PP
2WRKY106.71.2e-33446504159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+vkg+++prsYYrCt++gC+v+k+ver+++dpk v++tYeg+H+he
  Bradi3g39340.2.p 446 LDDGYRWRKYGQKVVKGNPNPRSYYRCTHPGCSVRKHVERASNDPKSVITTYEGKHDHE 504
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.917267331IPR003657WRKY domain
SuperFamilySSF1182902.22E-26269331IPR003657WRKY domain
SMARTSM007745.3E-36272330IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-29272331IPR003657WRKY domain
PfamPF031065.8E-25273329IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.4E-37431506IPR003657WRKY domain
SuperFamilySSF1182901.83E-29438506IPR003657WRKY domain
PROSITE profilePS5081137.447441506IPR003657WRKY domain
SMARTSM007746.2E-39446505IPR003657WRKY domain
PfamPF031064.2E-26447503IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MSGTGKRGAL TEDWMLPTPS PRTLMLSLFN EDLSSGPCSD VFGDNKPQDG IDGAKPSLVV  60
SSWEETTQVV EAPPHFEPNL FGAKEKPISG SSLAERMAPG NGLCALQIDT SRVGSSVSIR  120
SPVVIPPGVS PRELLESPVF LPNAIAQPSP TTGKLPFLMR ANANLAIPSV HKKDEDLSSR  180
DGCTIFFQPI LRPKPPIFPT TNKTSVGDNR QDLSLQSSST ATKDVTRTTS VKPKKLDFMF  240
DNDHPIPIPD KEQEECDADR DGNYSLAPVI AAEDGYNWRK YGQKQVKNSD HPRSYYKCSH  300
PNCPVKKKVE RCQDGHITEI VYKGSHNHPL PPPSHHFQDV HGEILGTKLS ASLNTADQLA  360
DISAVETREA VDSSPVLSNE DDNKGTHGTV YLGFDGGGDA TGSKRRKMDS VTSTTAIGTI  420
DIEAMASRAV QEPRVIVQTT SDVDILDDGY RWRKYGQKVV KGNPNPRSYY RCTHPGCSVR  480
KHVERASNDP KSVITTYEGK HDHEVPAARN TGSPSSGPGG APPAPPQANI LHRSPEPAQG  540
RLSQSGGLAA YGSTGRSGVA DAFSSGMLPH GIAVLAPPLG TFAPSQISGH PPAMQGYARR  600
MPLTGEEKVN PAAQHGKPAT NRTTAYQQLM GRLSQDPQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36273507878Probable WRKY transcription factor 4
2lex_A1e-36273507878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g39340.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0655186e-49AK065518.1 Oryza sativa Japonica Group cDNA clone:J013025I24, full insert sequence.
GenBankAP0038736e-49AP003873.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1118_A06.
GenBankAP0149646e-49AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAY8706106e-49AY870610.1 Oryza sativa (japonica cultivar-group) WRKY30 mRNA, complete cds.
GenBankCP0126166e-49CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
GenBankCT8288686e-49CT828868.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI209L14, full insert sequence.
GenBankCT8288696e-49CT828869.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI216M15, full insert sequence.
GenBankDQ2981806e-49DQ298180.1 Oryza sativa (japonica cultivar-group) WRKY transcription factor 30 mRNA, complete cds.
GenBankHM1534286e-49HM153428.1 Oryza sativa Japonica Group transcription factor WRKY30 (WRKY30) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317218.10.0probable WRKY transcription factor 2
TrEMBLA0A0Q3QAW10.0A0A0Q3QAW1_BRADI; Uncharacterized protein
STRINGBRADI3G39340.10.0(Brachypodium distachyon)
STRINGPavir.J35763.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.11e-73WRKY DNA-binding protein 34