PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g39177.1.p
Common NameBRADI_3g39177, LOC100823584
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 361aa    MW: 39454.5 Da    PI: 5.2068
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g39177.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.55.4e-26958150
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      krien++nr+vtfskRrng++KKA+ELSvLCd+++a+++fs++ +l  +s
  Bradi3g39177.1.p  9 KRIENNTNRHVTFSKRRNGLIKKAYELSVLCDIDIALLMFSPSKRLCPFS 58
                      79*****************************************9998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.754161IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-33160IPR002100Transcription factor, MADS-box
CDDcd002655.67E-32272No hitNo description
SuperFamilySSF554551.15E-27282IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-23323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003199.5E-241056IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-232338IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-233859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MGRVKLPIKR IENNTNRHVT FSKRRNGLIK KAYELSVLCD IDIALLMFSP SKRLCPFSGR  60
HGVEDVLLRY LNMTDHDRGE PIQNREYLIS MLQRLKRESD MATQMANPGA LNEKIEEIQQ  120
EIYGSQQQLQ ISEERLRLFE PDPAAFGSAS EIDGCEKFLM DMLTRVVERK NYLLSNHMAP  180
FDPTAPGMQG GNGPQMYVHH HHHPAPQQAA GEGSGLVGAF AADAAALWAS DPSGGPSNPA  240
HHNLFAASDP MIYLRDQDVY EASSSQAEAW RQAYTCTELL STLIPATPFP LMQHCLGPDD  300
GGPYGNGGLP AMATTMQQQQ EVEASASCSY TMPTSDETAG TPPVLQPAAY DSAAMPPGIP  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A2e-17197190MEF2 CHIMERA
6bz1_B2e-17197190MEF2 CHIMERA
6bz1_C2e-17197190MEF2 CHIMERA
6bz1_D2e-17197190MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g39177.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693350.0KF469335.1 Brachypodium distachyon MADS-box transcription factor 41 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233634.10.0agamous-like MADS-box protein AGL11-like isoform X1
TrEMBLA0A0Q3HZ210.0A0A0Q3HZ21_BRADI; Uncharacterized protein
STRINGBRADI3G39177.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49533360
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.12e-71AGAMOUS-like 66
Publications ? help Back to Top
  1. Wei B, et al.
    Genome-wide analysis of the MADS-box gene family in Brachypodium distachyon.
    PLoS ONE, 2014. 9(1): p. e84781
    [PMID:24454749]