PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g38890.1.p
Common NameBRADI_3g38890, LOC100844897
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 329aa    MW: 35344.7 Da    PI: 7.182
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g38890.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.66e-10158206355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+++E+ RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Bradi3g38890.1.p 158 NSHSIAEKLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 206
                       58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.11E-17152222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.04E-11153210No hitNo description
Gene3DG3DSA:4.10.280.102.0E-16154221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.428155205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-7158206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-10161211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MMDGANGDGV GVERSYASSG HSVLPIAWQS FTASSHAAPA RRDMDSFAWA SVSRRTAAGG  60
SLFPPEHGLQ ASQAAAGYEH FPADSKKKRR RSDEVSGTDH AKTSNGAEET ERGKDAKGEE  120
EAGPAAAAAT GQSKGKGAGE RQKEGYVHVR ARSEQATNSH SIAEKLRREK ISERMKLLQD  180
LVPGCSKVTG KAVMLDEIIN YVQSLQRQVE FLSMKLSTVN PRLGVDIELL LAKDILPFSW  240
ASSTGPMGLS FSQEMMPKPS QPGMLQGDVH GMANPDTLRA LMQSFSQEPA SQMHLGRPFH  300
GAVQMAYPPL VIGSEDMSIR TDHDGFHI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18590KKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g38890.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014756140.10.0transcription factor bHLH49 isoform X1
SwissprotQ9CAA91e-51BH049_ARATH; Transcription factor bHLH49
TrEMBLA0A0Q3HYZ10.0A0A0Q3HYZ1_BRADI; Uncharacterized protein
STRINGBRADI3G38890.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.34e-49bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]