PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi3g38747.3.p | ||||||||
Common Name | BRADI_3g38747, LOC100843369 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 916aa MW: 98111.6 Da PI: 8.0184 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.1 | 0.0013 | 387 | 406 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C+k+F +s + H Bradi3g38747.3.p 387 FECPLCHKTFEEQSWYFGHV 406 89************999886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50982 | 10.089 | 210 | 283 | IPR001739 | Methyl-CpG DNA binding |
SuperFamily | SSF54171 | 1.01E-7 | 215 | 264 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.890.10 | 2.0E-6 | 219 | 263 | IPR001739 | Methyl-CpG DNA binding |
Pfam | PF01429 | 7.2E-7 | 220 | 263 | IPR001739 | Methyl-CpG DNA binding |
SMART | SM00355 | 3.4 | 340 | 363 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 342 | 363 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.432 | 387 | 417 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.68 | 387 | 409 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 389 | 409 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 916 aa Download sequence Send to blast |
MVSMATEMVP VVDLRVLSQS DLDALAVASA HAVAPGSSPD AEPLPPLKID RAVFNESAGS 60 RKQTFTRLRL GNAAGSSSSA PTAIDTSPPA TAPSAGNDPG NNLIAYHLRS LFARDDPSRP 120 SSPPPPPETL ALALLGTSHS PPRSPSPDPD RQTTNSKGIS VDLVRLAELD GLYDEELGKR 180 TAGLMSEAEL MGFIKGLGGK WVSQRKKRKF VDASFFGDHL PSGWKLQLGL KRKARQAWVH 240 CLSYVSPTGR KFASCKEVSA YLMSLLGYPE VRKVPIQHNS TGQRDLCDGD GDNDAAGFQH 300 QVDSVVDNQN VLPVTSVAFS SHSSNSHGKV QGDINPANTY KCQECNLTLH DQSAYAQHHM 360 LFHEKGAKRR RKSSKFGQPV AGKDGKFECP LCHKTFEEQS WYFGHVGAHA KHHGLTPEAF 420 LDKISSGEIA DDSLTGMQFT FQELTESREQ NAKTSGQSGS QHLNYPKDKG GDSSKAKEFF 480 STKYMDNFNR PVEACSRSEE ISPVTDTRSA CKYRNNSADY TGVTVPKIAN QLDGRIGGLP 540 EVADFNDQAG SYNDFRPTIL ANANHYKDQI TDRGLAASKH GGVNNTVKAR DVNLNSCLAT 600 ISFPIASANN ETSISLDDTN QSSIAGKCFS GSFNNNDGAS TTSSCSGSNN KVSGFVGVSN 660 GSSNASRCVS ASHGDDAVAN TFSNKNNTMV YHSSLSTHPT SPVATGVDCF PSRSAHPKDS 720 DKEGAYGTRM DAMQNRTSNA AGFSAEAYNS GIYTADVTGR NCAQFNSSFS HLKPNTPSRC 780 SQPESNTLTA NNFTKGIDVN CMNGSFVHRS DANNMKGSFV NRPISNNEPN GYVHSMMGKP 840 SNAMQNHYNG AAPSCAPLSA ANTSQNVNGL MSMQANFGSM STLVHSVGDV PRSSTTKDQK 900 LGLWHPVNMN NIKLR* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 229 | 235 | LKRKARQ |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi3g38747.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010235238.1 | 0.0 | uncharacterized protein LOC100843369 | ||||
TrEMBL | A0A0Q3JK38 | 0.0 | A0A0Q3JK38_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G38747.1 | 0.0 | (Brachypodium distachyon) |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi3g38747.3.p |
Entrez Gene | 100843369 |