PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g38747.1.p

Common Name

BRADI_3g38747, LOC100843369

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

C2H2

Protein Properties

Length: 1150aa MW: 122310 Da PI: 8.076

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g38747.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.7	0.0016	387	406	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C+k+F +s + H Bradi3g38747.1.p 387 FECPLCHKTFEEQSWYFGHV 406 89************999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50982	10.089	210	283	IPR001739	Methyl-CpG DNA binding
SuperFamily	SSF54171	1.37E-7	215	264	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.890.10	2.7E-6	219	263	IPR001739	Methyl-CpG DNA binding
Pfam	PF01429	9.5E-7	220	263	IPR001739	Methyl-CpG DNA binding
SMART	SM00355	3.4	340	363	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	342	363	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.432	387	417	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.68	387	409	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	389	409	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1150 aa Download sequence Send to blast
MVSMATEMVP VVDLRVLSQS DLDALAVASA HAVAPGSSPD AEPLPPLKID RAVFNESAGS 60 RKQTFTRLRL GNAAGSSSSA PTAIDTSPPA TAPSAGNDPG NNLIAYHLRS LFARDDPSRP 120 SSPPPPPETL ALALLGTSHS PPRSPSPDPD RQTTNSKGIS VDLVRLAELD GLYDEELGKR 180 TAGLMSEAEL MGFIKGLGGK WVSQRKKRKF VDASFFGDHL PSGWKLQLGL KRKARQAWVH 240 CLSYVSPTGR KFASCKEVSA YLMSLLGYPE VRKVPIQHNS TGQRDLCDGD GDNDAAGFQH 300 QVDSVVDNQN VLPVTSVAFS SHSSNSHGKV QGDINPANTY KCQECNLTLH DQSAYAQHHM 360 LFHEKGAKRR RKSSKFGQPV AGKDGKFECP LCHKTFEEQS WYFGHVGAHA KHHGLTPEAF 420 LDKISSGEIA DDSLTGMQFT FQELTESREQ NAKTSGQSGS QHLNYPKDKG GDSSKAKEFF 480 STKYMDNFNR PVEACSRSEE ISPVTDTRSA CKYRNNSADY TGVTVPKIAN QLDGRIGGLP 540 EVADFNDQAG SYNDFRPTIL ANANHYKDQI TDRGLAASKH GGVNNTVKAR DVNLNSCLAT 600 ISFPIASANN ETSISLDDTN QSSIAGKCFS GSFNNNDGAS TTSSCSGSNN KVSGFVGVSN 660 GSSNASRCVS ASHGDDAVAN TFSNKNNTMV YHSSLSTHPT SPVATGVDCF PSRSAHPKDS 720 DKEGAYGTRM DAMQNRTSNA AGFSAEAYNS GIYTADVTGR NCAQFNSSFS HLKPNTPSRC 780 SQPESNTLTA NNFTKGIDVN CMNGSFVHRS DANNMKGSFV NRPISNNEPN GYVHSMMGKP 840 SNAMQNHYNG AAPSCAPLSA ANTSQNVNGL MSMQANFGSM STLVHSVGDV PRSSTTKDQC 900 DLQLGFGGQK QQISARYGDL SPAASGSTQL GGMGRNNNLP AGSSQFGSMA RPNSLPAGFS 960 QFGSMARPNS LPAGSSQFGS MARPNSLTGG FSQFGSLASS NYLQTGSSQF GRMAGPNSIG 1020 PADSSQFGRM AGPNSRPPAE SSQFGSMARP NSRPPAESSQ FGSMANQNFV RTSEPTLQMG 1080 SGPRAQSGWD LNLSRMVNGG GMTLEVCMWC NGQYHHFGPV EQTQALICPS CRDKMALQGL 1140 VPNDGSWQP*

Sequence ? help Back to Top

Protein Sequence Length: 1150 aa Download sequence Send to blast

MVSMATEMVP VVDLRVLSQS DLDALAVASA HAVAPGSSPD AEPLPPLKID RAVFNESAGS  60
RKQTFTRLRL GNAAGSSSSA PTAIDTSPPA TAPSAGNDPG NNLIAYHLRS LFARDDPSRP  120
SSPPPPPETL ALALLGTSHS PPRSPSPDPD RQTTNSKGIS VDLVRLAELD GLYDEELGKR  180
TAGLMSEAEL MGFIKGLGGK WVSQRKKRKF VDASFFGDHL PSGWKLQLGL KRKARQAWVH  240
CLSYVSPTGR KFASCKEVSA YLMSLLGYPE VRKVPIQHNS TGQRDLCDGD GDNDAAGFQH  300
QVDSVVDNQN VLPVTSVAFS SHSSNSHGKV QGDINPANTY KCQECNLTLH DQSAYAQHHM  360
LFHEKGAKRR RKSSKFGQPV AGKDGKFECP LCHKTFEEQS WYFGHVGAHA KHHGLTPEAF  420
LDKISSGEIA DDSLTGMQFT FQELTESREQ NAKTSGQSGS QHLNYPKDKG GDSSKAKEFF  480
STKYMDNFNR PVEACSRSEE ISPVTDTRSA CKYRNNSADY TGVTVPKIAN QLDGRIGGLP  540
EVADFNDQAG SYNDFRPTIL ANANHYKDQI TDRGLAASKH GGVNNTVKAR DVNLNSCLAT  600
ISFPIASANN ETSISLDDTN QSSIAGKCFS GSFNNNDGAS TTSSCSGSNN KVSGFVGVSN  660
GSSNASRCVS ASHGDDAVAN TFSNKNNTMV YHSSLSTHPT SPVATGVDCF PSRSAHPKDS  720
DKEGAYGTRM DAMQNRTSNA AGFSAEAYNS GIYTADVTGR NCAQFNSSFS HLKPNTPSRC  780
SQPESNTLTA NNFTKGIDVN CMNGSFVHRS DANNMKGSFV NRPISNNEPN GYVHSMMGKP  840
SNAMQNHYNG AAPSCAPLSA ANTSQNVNGL MSMQANFGSM STLVHSVGDV PRSSTTKDQC  900
DLQLGFGGQK QQISARYGDL SPAASGSTQL GGMGRNNNLP AGSSQFGSMA RPNSLPAGFS  960
QFGSMARPNS LPAGSSQFGS MARPNSLTGG FSQFGSLASS NYLQTGSSQF GRMAGPNSIG  1020
PADSSQFGRM AGPNSRPPAE SSQFGSMARP NSRPPAESSQ FGSMANQNFV RTSEPTLQMG  1080
SGPRAQSGWD LNLSRMVNGG GMTLEVCMWC NGQYHHFGPV EQTQALICPS CRDKMALQGL  1140
VPNDGSWQP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	229	235	LKRKARQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g38747.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010235238.1	0.0	uncharacterized protein LOC100843369
TrEMBL	A0A0Q3QAL8	0.0	A0A0Q3QAL8_BRADI; Uncharacterized protein
STRING	BRADI3G38747.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2687	14	19
Representative plant	OGRP2035	7	9

Link Out ? help Back to Top
Phytozome	Bradi3g38747.1.p
Entrez Gene	100843369