PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g38179.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 830aa    MW: 95711.4 Da    PI: 9.4562
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g38179.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.41.5e-2046158191
              FAR1   1 kfYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkk.....................tekerrtraetrtgCkaklkvkk 70 
                       +fYn+YA+  G s +k++ ++s  ++ g+ t++tf+C++ gk  +++k+                      +k+r+++  + t+Cka++++++
  Bradi3g38179.2.p  46 EFYNTYASVSGSSAKKASCYHSrkRDIGKPTRHTFKCNRCGKVLDKEKQgekrrdeqirraekkviqglqPQKKRKRNLLEVTDCKAQMVISL 138
                       6*****************999954556889************999999999******************989999999*************** PP

              FAR1  71 ekdgkwevtkleleHnHelap 91 
                       + +gkwev++le eHnHel+p
  Bradi3g38179.2.p 139 R-SGKWEVITLEVEHNHELSP 158
                       *.*****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.3E-1946158IPR004330FAR1 DNA binding domain
PfamPF105514.6E-32278372IPR018289MULE transposase domain
PROSITE profilePS5096610.113562598IPR007527Zinc finger, SWIM-type
PfamPF044341.1E-5562598IPR007527Zinc finger, SWIM-type
SMARTSM005751.0E-5573600IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 830 aa     Download sequence    Send to blast
MLSEEDIDIF LDNEVITEAV TSSQEVRDSL VPRMGMLFDS DKEAYEFYNT YASVSGSSAK  60
KASCYHSRKR DIGKPTRHTF KCNRCGKVLD KEKQGEKRRD EQIRRAEKKV IQGLQPQKKR  120
KRNLLEVTDC KAQMVISLRS GKWEVITLEV EHNHELSPPD ETRFLISHKH MTNEEKQLIR  180
TLNAVKLPTR KIMGILAVYR GGIKAVPYNK KYVSNYMTAI KQESRTNDMM QVSEYFTKRE  240
SLDPLFYFAI KLDVNNTVKS LFWADSNARR LYEAYGDCVS FDTTYGTNRY NLPFSPFVGI  300
TGHGSNCLFG CSILENETIE TFKWLFETFL HRMHGKHPVS IITDQDVAMK QAIPLVFKNV  360
THRNCLWHIK KKAEERCAKA FATKRNLHEE FNDILNNTLT KEEFEELGPQ MIVKYGVEDI  420
KYLQDMWLDR RRFVPVYYKN VFFPFINSTT RSEGTNAIFK DNVCSTYTVI SLLGEYQTIA  480
ENIEEKEKEL DLVTRTTNPS YIHCSEMEIV TGKAYNRAIF YKFQKQLRFT SNLHVDEVQR  540
FEKYEVYKSN YYAAMEFRSR RYVVAVDMKN KDFACLCCKF QKDGILCAHI LKVLIHLNIP  600
RIPDKYIIQR WRPRDRKVER DKRYNIPREL TCGNSQLRYN ILCRWYTDIS SEGAQHNEDY  660
LMLVEEAKRL QEKLHANAAA REGRKGSSDE GSGQGNPNAA EPSAVPVQPK PHIQINDPTV  720
ATAKGRPRGT GRMKSVVERI FTKQRITCSH CGSHDHNIAT CTMLHLDRRC AQGTKKQTRK  780
VQKKGGGGKP TGNIETSRNE GSTSVVTVEA AEHILRRMDL EAAKVARAG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g38179.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236728.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2K2D1X60.0A0A2K2D1X6_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-92FAR1-related sequence 5