PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g37890.3.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 478aa    MW: 51132.6 Da    PI: 9.5431
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g37890.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.7e-066789123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C++C++ F r  nL+ H r+H
  Bradi3g37890.3.p 67 YVCEICNQGFQRDQNLQMHRRRH 89
                      9*********************9 PP
2zf-C2H211.70.0008147168223
                       EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                        C  C+k +  +s++k H++t+
  Bradi3g37890.3.p 147 ACARCSKAYAVHSDYKAHLKTC 168
                       6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.35E-56490No hitNo description
Gene3DG3DSA:3.30.160.602.0E-56689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00526789IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.976789IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM00355110110140IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.600.001137167IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355230146173IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.58166200IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MLSSCALTAV PPSEAAAAGP PEPFRPTPIP TGVGAAAKRK RRPAGTPDPD AEVVSLTPRT  60
LLESDRYVCE ICNQGFQRDQ NLQMHRRRHK VPWKLLKREE GEAAARKRVF VCPEPSCLHH  120
DPAHALGDLV GIKKHFRRKH SGHRQWACAR CSKAYAVHSD YKAHLKTCGT RGHSCDCGRV  180
FSRVESFIEH QDMCDAGGRP PRGDTTSSSA GRGGGARAAS ASTSHRQQQQ QLHAAAGASL  240
SRTASSASPS SGADLVGSPV AWPAPSPTAH QHNLELQLMP PRGTAGPIAR RASPPAAVIP  300
KPDADANAMR LELSIGVRFG AGAREDSNSS SEAEDMAAAA RALKGEAREQ LRLAAMEKAA  360
ADETRAEARR HAELAEQELA GARRMREQAR AELGRAHAVR DHAVRQLDAA LLEITCYGCR  420
GKFRARAATM AAASYDVPSV VTEGEAGIGN GQQMALLQYD AADDRLPRGR RAMMDMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-18142196357Zinc finger protein JACKDAW
5b3h_F6e-18142196357Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g37890.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8336800.0CT833680.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA234B05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572281.10.0protein indeterminate-domain 16
SwissprotQ9C9X71e-128IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLA0A2K2D1U90.0A0A2K2D1U9_BRADI; Uncharacterized protein
STRINGBRADI3G37890.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.16e-99C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Arendsee ZW,Li L,Wurtele ES
    Coming of age: orphan genes in plants.
    Trends Plant Sci., 2014. 19(11): p. 698-708
    [PMID:25151064]
  2. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]