PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g37890.1.p

Common Name

BRADI_3g37890

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

C2H2

Protein Properties

Length: 438aa MW: 47202 Da PI: 9.0792

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g37890.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.6	5.1e-06	27	49	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H Bradi3g37890.1.p 27 YVCEICNQGFQRDQNLQMHRRRH 49 9*********************9 PP
2	zf-C2H2	11.8	0.00072	107	128	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C C+k + +s++k H++t+ Bradi3g37890.1.p 107 ACARCSKAYAVHSDYKAHLKTC 128 6*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.82E-5	24	50	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.8E-5	26	49	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.97	27	49	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0052	27	49	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	29	49	IPR007087	Zinc finger, C2H2
SMART	SM00355	110	70	100	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	9.0E-4	97	127	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	230	106	133	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.58	126	160	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MAMANNADPD AEVVSLTPRT LLESDRYVCE ICNQGFQRDQ NLQMHRRRHK VPWKLLKREE 60 GEAAARKRVF VCPEPSCLHH DPAHALGDLV GIKKHFRRKH SGHRQWACAR CSKAYAVHSD 120 YKAHLKTCGT RGHSCDCGRV FSRVESFIEH QDMCDAGGRP PRGDTTSSSA GRGGGARAAS 180 ASTSHRQQQQ QLHAAAGASL SRTASSASPS SGADLVGSPV AWPAPSPTAH QHNLELQLMP 240 PRGTAGPIAR RASPPAAVIP KPDADANAMR LELSIGVRFG AGAREDSNSS SEAEDMAAAA 300 RALKGEAREQ LRLAAMEKAA ADETRAEARR HAELAEQELA GARRMREQAR AELGRAHAVR 360 DHAVRQLDAA LLEITCYGCR GKFRARAATM AAASYDVPSV VTEGEAGIGN GQQMALLQYD 420 AADDRLPRGR RAMMDMN*

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MAMANNADPD AEVVSLTPRT LLESDRYVCE ICNQGFQRDQ NLQMHRRRHK VPWKLLKREE  60
GEAAARKRVF VCPEPSCLHH DPAHALGDLV GIKKHFRRKH SGHRQWACAR CSKAYAVHSD  120
YKAHLKTCGT RGHSCDCGRV FSRVESFIEH QDMCDAGGRP PRGDTTSSSA GRGGGARAAS  180
ASTSHRQQQQ QLHAAAGASL SRTASSASPS SGADLVGSPV AWPAPSPTAH QHNLELQLMP  240
PRGTAGPIAR RASPPAAVIP KPDADANAMR LELSIGVRFG AGAREDSNSS SEAEDMAAAA  300
RALKGEAREQ LRLAAMEKAA ADETRAEARR HAELAEQELA GARRMREQAR AELGRAHAVR  360
DHAVRQLDAA LLEITCYGCR GKFRARAATM AAASYDVPSV VTEGEAGIGN GQQMALLQYD  420
AADDRLPRGR RAMMDMN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	8e-18	102	156	3	57	Zinc finger protein JACKDAW
5b3h_F	8e-18	102	156	3	57	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269\|PubMed:21556057, ECO:0000269\|PubMed:24039602}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g37890.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by auxin. {ECO:0000269\|PubMed:24039602}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT833680	0.0	CT833680.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA234B05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003572281.1	0.0	protein indeterminate-domain 16
Swissprot	Q9C9X7	1e-119	IDD14_ARATH; Protein indeterminate-domain 14
TrEMBL	A0A0Q3FHB7	0.0	A0A0Q3FHB7_BRADI; Uncharacterized protein
STRING	BRADI3G37890.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25250.1	2e-96	indeterminate(ID)-domain 16

Link Out ? help Back to Top
Phytozome	Bradi3g37890.1.p

Publications ? help Back to Top
Arendsee ZW,Li L,Wurtele ES Coming of age: orphan genes in plants. Trends Plant Sci., 2014. 19(11): p. 698-708 [PMID:25151064] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128]