PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g37700.1.p | ||||||||
Common Name | BRADI_3g37700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | Nin-like | ||||||||
Protein Properties | Length: 154aa MW: 17485.9 Da PI: 6.232 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 36.6 | 9.1e-12 | 59 | 102 | 7 | 50 |
RWP-RK 7 ledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 l+++ +y +lp+ +AAkeL++ + +LK R++GI+ WP +ik Bradi3g37700.1.p 59 LDEILRYLHLPMVEAAKELKMTPKALKHLSRRHGINPWPTQRIK 102 678999**********************************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 11.354 | 40 | 124 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 6.4E-11 | 59 | 102 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MDHFQVTILE SSLVDESNDG LVVVPMPVAP PATWNENPHA DMQHDKGTIV EQHERDDMLD 60 EILRYLHLPM VEAAKELKMT PKALKHLSRR HGINPWPTQR IKATNKNITK LLDAGTHGNN 120 KREASIQFKN MDLEKNKEEM HEKIATQSAE PEI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g37700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | I1I7N7 | 1e-109 | I1I7N7_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G37700.1 | 1e-110 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP50198 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24020.1 | 2e-09 | NIN like protein 7 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g37700.1.p |