PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g37360.1.p

Common Name

BRADI_3g37360

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

MYB

Protein Properties

Length: 189aa MW: 20237.5 Da PI: 4.608

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g37360.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.4	9e-15	10	55	3	48
SS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEde l ++v+ Gg tW++Iar ++ gR +k+c++rw ++l Bradi3g37360.1.p 10 AWTEEEDEALRRGVRDGGGArTWDAIARGVP-GRDPKSCRLRWCQHL 55 8**************9889******.*********9986 PP
2	Myb_DNA-binding	40.9	4.8e-13	65	106	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T++Ed +++ +++G++ W+tIa ++g gR+++ +k+rw++ Bradi3g37360.1.p 65 PFTAQEDAEIIRRQREFGNK-WATIALHLG-GRSDNAIKNRWNS 106 79****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.988	3	59	IPR017930	Myb domain
SMART	SM00717	6.2E-12	7	57	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.11E-24	7	104	IPR009057	Homeodomain-like
Pfam	PF00249	4.7E-13	9	55	IPR001005	SANT/Myb domain
CDD	cd00167	5.79E-12	10	55	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.4E-18	10	69	IPR009057	Homeodomain-like
SMART	SM00717	2.6E-12	62	110	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	17.423	62	112	IPR017930	Myb domain
CDD	cd00167	2.07E-10	65	105	No hit	No description
Pfam	PF00249	1.2E-11	65	106	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.6E-17	70	112	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MSADGGKKAA WTEEEDEALR RGVRDGGGAR TWDAIARGVP GRDPKSCRLR WCQHLAPQLL 60 DAGRPFTAQE DAEIIRRQRE FGNKWATIAL HLGGRSDNAI KNRWNSALRK QLPMVAGADD 120 GHHHDDDAEE VAAEDDVPVC LELFPLTAGS LKEEAAAAAG EGDVVTDLTL GLPGGEAEEA 180 VVDLALRL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3zqc_A	2e-23	8	142	2	131	MYB3
3zqc_D	2e-23	8	142	2	131	MYB3
3zqc_G	2e-23	8	142	2	131	MYB3
3zqc_J	2e-23	8	142	2	131	MYB3
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g37360.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010236715.1	9e-92	transcription factor MYB44
TrEMBL	I1I7J9	1e-131	I1I7J9_BRADI; Uncharacterized protein
STRING	BRADI3G37360.1	1e-132	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4960	34	65
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	1e-34	myb domain protein 77

Link Out ? help Back to Top
Phytozome	Bradi3g37360.1.p