PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g37067.1.p | ||||||||
Common Name | BRADI_3g37067, LOC100837405 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 382aa MW: 43069.8 Da PI: 7.4042 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.9 | 1.7e-52 | 16 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l pGfrFhPtdeelv++yLkkk+++k++++ e i+++diyk++PwdLpk ++++e+ewyf+++rd+ky+++ r+nr+t++g+Wkatg+d++++ Bradi3g37067.1.p 16 LLPGFRFHPTDEELVSFYLKKKIQQKPISI-ELIRQLDIYKFDPWDLPKLASTGETEWYFYCPRDRKYRNSARPNRVTAAGFWKATGTDRPIY 107 579***************************.89***************88888999************************************* PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 s+ +++ +glkk+Lvfykgra +g ktdW+mhe+rl Bradi3g37067.1.p 108 SSeGTRCIGLKKSLVFYKGRAARGMKTDWMMHEFRL 143 *856667***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-57 | 13 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.992 | 16 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.5E-26 | 18 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MEGRNDISMD KSEEILLPGF RFHPTDEELV SFYLKKKIQQ KPISIELIRQ LDIYKFDPWD 60 LPKLASTGET EWYFYCPRDR KYRNSARPNR VTAAGFWKAT GTDRPIYSSE GTRCIGLKKS 120 LVFYKGRAAR GMKTDWMMHE FRLPSLADPS LPKRPIDKNI PLNDSWTICR IFKKTSSMAQ 180 RAMSHTWGPP LATEQHIFSA MQPVQASHFP LESSSCSLQV AAAPASQFTG KYDFQGQQQQ 240 FQKPNNAQDG SSCKVISFNC SPPLEAQKCP IILPFQAQPP QKPDDAAPPQ PFDIMEFGQP 300 EQVTGFVIDS SADVNAGMNT RNQDSSTRKP GNALNMNTEW EAPGKLNFPF DLGADSPDDW 360 KCNIPWESFL SPTVPAEMPH Y* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-52 | 16 | 177 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-52 | 16 | 177 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-52 | 16 | 177 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-52 | 16 | 177 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-52 | 16 | 177 | 17 | 168 | NAC domain-containing protein 19 |
4dul_B | 3e-52 | 16 | 177 | 17 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g37067.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073013 | 0.0 | AK073013.1 Oryza sativa Japonica Group cDNA clone:J033000B16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003574551.1 | 0.0 | protein FEZ | ||||
Swissprot | Q9ZVH0 | 5e-96 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | I1I7G4 | 0.0 | I1I7G4_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G37067.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3366 | 38 | 82 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 4e-98 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g37067.1.p |
Entrez Gene | 100837405 |
Publications ? help Back to Top | |||
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