PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi3g36867.3.p | ||||||||
Common Name | BRADI_3g36867, LOC104583714 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 311aa MW: 35541.2 Da PI: 8.9983 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15 | 7.2e-05 | 213 | 233 | 1 | 21 |
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 +kC++C+ +++ks+L++H++ Bradi3g36867.3.p 213 WKCGICNANCTSKSDLESHLQ 233 58*****************96 PP | |||||||
2 | zf-C2H2 | 11.6 | 0.00083 | 274 | 294 | 2 | 22 |
EETTTTEEESSHHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt 22 kC +C+ s+s+ks+L++H+r Bradi3g36867.3.p 274 KCIICNASCSSKSDLESHLRG 294 6779***************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.86E-8 | 143 | 183 | No hit | No description |
SMART | SM00451 | 5.1E-4 | 149 | 183 | IPR003604 | Zinc finger, U1-type |
Pfam | PF12874 | 3.7E-7 | 152 | 176 | No hit | No description |
SMART | SM00355 | 0.19 | 152 | 176 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 154 | 176 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.12E-10 | 202 | 244 | No hit | No description |
SMART | SM00451 | 4.5E-5 | 210 | 244 | IPR003604 | Zinc finger, U1-type |
Pfam | PF12874 | 7.2E-9 | 213 | 237 | No hit | No description |
SMART | SM00355 | 0.098 | 213 | 237 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 215 | 237 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.41E-9 | 255 | 306 | No hit | No description |
SMART | SM00451 | 0.12 | 270 | 304 | IPR003604 | Zinc finger, U1-type |
Pfam | PF12874 | 9.6E-8 | 273 | 297 | No hit | No description |
SMART | SM00355 | 0.0084 | 273 | 297 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 275 | 297 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 311 aa Download sequence Send to blast |
MEFARRAAAR ANADDIDGIP IPPPYAKMTV EALRQELLQE DIRQQIIVAE LAERRKLEAE 60 FERERGLHGD LGARLPQIIM PHRDTSPLPL GEPLVTTAPK PRRSVKDRIE EWYQPPWHRR 120 AEEVDVSIDA AGLHTKTLSG VKRKRTAETL LWVCSICNVT CHRETDVQSH LRGRRHQEET 180 ENQQREGRDI EAKLHEKKAP QLADKNQKPV SRWKCGICNA NCTSKSDLES HLQGRRHLKN 240 VENQQRDGKD IEAKPHENKA SQLDKNQKPA SIWKCIICNA SCSSKSDLES HLRGRRHHWN 300 IQAQRLEGSS * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi3g36867.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010235166.1 | 0.0 | zinc finger homeobox protein 2 | ||||
TrEMBL | A0A2K2D1P1 | 0.0 | A0A2K2D1P1_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G36867.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14166 | 5 | 5 | Representative plant | OGRP8973 | 2 | 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi3g36867.3.p |
Entrez Gene | 104583714 |