PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g36867.1.p
Common NameBRADI_3g36867, LOC104583714
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 307aa    MW: 35144.7 Da    PI: 9.1895
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g36867.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.1e-05209229121
                       EEETTTTEEESSHHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                       +kC++C+  +++ks+L++H++
  Bradi3g36867.1.p 209 WKCGICNANCTSKSDLESHLQ 229
                       58*****************96 PP
2zf-C2H211.70.00082270290222
                       EETTTTEEESSHHHHHHHHHH CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirt 22 
                       kC +C+ s+s+ks+L++H+r 
  Bradi3g36867.1.p 270 KCIICNASCSSKSDLESHLRG 290
                       6779***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.62E-8138179No hitNo description
SMARTSM004515.1E-4145179IPR003604Zinc finger, U1-type
PfamPF128743.7E-7148172No hitNo description
SMARTSM003550.19148172IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280150172IPR007087Zinc finger, C2H2
SuperFamilySSF576675.95E-10198240No hitNo description
SMARTSM004514.5E-5206240IPR003604Zinc finger, U1-type
PfamPF128747.1E-9209233No hitNo description
SMARTSM003550.098209233IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280211233IPR007087Zinc finger, C2H2
SuperFamilySSF576675.3E-9251302No hitNo description
SMARTSM004510.12266300IPR003604Zinc finger, U1-type
PfamPF128749.4E-8269293No hitNo description
SMARTSM003550.0084269293IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280271293IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEFARRAAAR ANADDIDGIP IPPPYAKMTV EALRQELLQE DIRQQIIVAE LAERRKLEAE  60
FERERGLHGD LGARLPQIIM PHRDTSPLPL VTTAPKPRRS VKDRIEEWYQ PPWHRRAEEV  120
DVSIDAAGLH TKTLSGVKRK RTAETLLWVC SICNVTCHRE TDVQSHLRGR RHQEETENQQ  180
REGRDIEAKL HEKKAPQLAD KNQKPVSRWK CGICNANCTS KSDLESHLQG RRHLKNVENQ  240
QRDGKDIEAK PHENKASQLD KNQKPASIWK CIICNASCSS KSDLESHLRG RRHHWNIQAQ  300
RLEGSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g36867.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235166.10.0zinc finger homeobox protein 2
TrEMBLI1I7E20.0I1I7E2_BRADI; Uncharacterized protein
STRINGBRADI3G36867.10.0(Brachypodium distachyon)