PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g36740.1.p | ||||||||
Common Name | BRADI_3g36740, LOC100838603 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 377aa MW: 40272.6 Da PI: 8.716 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.5 | 4.7e-16 | 78 | 123 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l ++v+++G+ +W++Ia+++ gR++k+c++rw++ Bradi3g36740.1.p 78 RGHWRPAEDAKLRELVALYGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 123 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 49 | 1.4e-15 | 131 | 173 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++ eE+e+l a++ +G++ W+ Iar ++ gRt++ +k++w+ Bradi3g36740.1.p 131 RPFSDEEEERLMGAHRFYGNK-WAMIARLFP-GRTDNAVKNHWHV 173 68*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.457 | 73 | 124 | IPR017930 | Myb domain |
SMART | SM00717 | 6.1E-14 | 77 | 126 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.16E-27 | 78 | 171 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.8E-26 | 79 | 131 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.90E-13 | 81 | 122 | No hit | No description |
Pfam | PF13921 | 9.3E-16 | 81 | 141 | No hit | No description |
PROSITE profile | PS51294 | 23.756 | 125 | 179 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-11 | 129 | 177 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.27E-9 | 132 | 172 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-19 | 132 | 178 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MPCSSVSPPW LLRVAAEQAA AAASSSSSST KGGGRVLTAT MDDTGATTGA AGGYNNNGQQ 60 ESCSSGQSSR QQQQLAARGH WRPAEDAKLR ELVALYGPQN WNLIAEKLDG RSGKSCRLRW 120 FNQLDPRISK RPFSDEEEER LMGAHRFYGN KWAMIARLFP GRTDNAVKNH WHVIMARKYR 180 EQSTAYRRRK LNQAVQRKLD SSSSSSVLPL STAAAGPGAG HVDFQQQQFD YSAGADGFSF 240 RHYCFPPFHG GSGAAAIAAA SVQEPSFCLF PGPSAALVHD GRLMTGWGGG DQGMGLARYG 300 DAPPPFLLPA SHGGWIAGGG SHHELARFIS DEAINGPPAG AARDHQQQQQ QQGAHFDFDQ 360 AAASPTFIDF LGVGAT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-32 | 78 | 178 | 7 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00222 | DAP | Transfer from AT1G69560 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g36740.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT041983 | 1e-123 | BT041983.1 Zea mays full-length cDNA clone ZM_BFb0095C08 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014755863.1 | 0.0 | transcription factor CSA | ||||
TrEMBL | I1I7C4 | 0.0 | I1I7C4_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G36740.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 1e-70 | myb domain protein 105 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g36740.1.p |
Entrez Gene | 100838603 |