PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g36710.5.p | ||||||||
Common Name | BRADI_3g36710, LOC100838007 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | G2-like | ||||||||
Protein Properties | Length: 280aa MW: 30742.7 Da PI: 5.8835 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 95.7 | 3.4e-30 | 18 | 71 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rlrWt LHerFv av++LGG+++AtPk++l++m+v+gLtl+h+kSHLQkYRl Bradi3g36710.5.p 18 ARLRWTRPLHERFVLAVSELGGADRATPKSVLRAMGVQGLTLYHLKSHLQKYRL 71 7****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-30 | 15 | 75 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.88E-15 | 16 | 74 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.7E-22 | 18 | 72 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.5E-6 | 19 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.8E-15 | 120 | 159 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MSSPSAQQHG GEAATARARL RWTRPLHERF VLAVSELGGA DRATPKSVLR AMGVQGLTLY 60 HLKSHLQKYR LAVSRDLAGN AGGGSLNVDR SSSSESQSNE YNDDDDTTAE LRDSSRSMAQ 120 MQREVQRKLH EQIEVQRTLQ LRMEAQGRYL QSVLRRAQQV LTDNSLAKAE LSELVSAVDT 180 ECLSSSSSQP RQQHRSAYSS CVSSSSSEAE SKSAGSRRRL HAGRHQGDCC TVEQPAQGKR 240 TFPFLQQMQD AEQQAAAEAE PEEEEEAEDG SSSEFDLNM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-18 | 16 | 75 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-18 | 16 | 75 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-18 | 17 | 72 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-18 | 17 | 72 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-18 | 17 | 72 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-18 | 17 | 72 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-18 | 16 | 75 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-18 | 16 | 75 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-18 | 16 | 75 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-18 | 16 | 75 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-18 | 16 | 75 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-18 | 16 | 75 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g36710.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP095207 | 2e-59 | FP095207.1 Phyllostachys edulis cDNA clone: bphyem201h10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014755397.1 | 0.0 | myb-related protein 2 | ||||
TrEMBL | I1I7C1 | 0.0 | I1I7C1_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G36710.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 1e-41 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g36710.5.p |
Entrez Gene | 100838007 |