PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g36670.3.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 366aa    MW: 40723.5 Da    PI: 5.9275
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g36670.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM149.81.3e-46321671128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvka..eekew.yfFskrdkkyatgkrknratksgyWk 84 
                       lppGfrF Ptdeelv++yL +k+ + +++   +i++vd+yk+ePwdLp+      +  a  + +e+ yfF+kr+ +y++g r++r+t+ gyWk
  Bradi3g36670.3.p  32 LPPGFRFFPTDEELVTFYLGNKAMDASFTS-AAIRDVDLYKSEPWDLPStgkaamT--AgsGGDECyYFFCKRSIRYPSGARARRSTAGGYWK 121
                       79*************************999.78**************954666542..2334445549************************* PP

               NAM  85 atgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +tgkdk+v+++  +++lvg+kktLvf++grap+gekt+Wvmhey l
  Bradi3g36670.3.p 122 STGKDKDVHCSreSNRLVGTKKTLVFHRGRAPRGEKTSWVMHEYML 167
                       *********98666677***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.29E-5425193IPR003441NAC domain
PROSITE profilePS5100554.50732193IPR003441NAC domain
PfamPF023657.8E-2533166IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MQACNLSLRL RYCYMHGVVF NQMEGEWQMG CLPPGFRFFP TDEELVTFYL GNKAMDASFT  60
SAAIRDVDLY KSEPWDLPST GKAAMTAGSG GDECYYFFCK RSIRYPSGAR ARRSTAGGYW  120
KSTGKDKDVH CSRESNRLVG TKKTLVFHRG RAPRGEKTSW VMHEYMLLAG QRSRNACSRA  180
DQGEWVICRV FVKKPPSDHR TLERDLGQGE ALHGQTSPGH LLPMDSDGCN GEEAAERAAS  240
QVLSDDPWDT NNRAMTSHEN DALVHHVDPS LIVDRPSCAS PFWPLYDDDQ LGPYCSTSTL  300
HILQQRSSLI SATDDLPELL EYGGYDIPKR GASPGSELTS SSEAEISYIS VVPLHLDESY  360
WNFGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-423219417166NO APICAL MERISTEM PROTEIN
1ut4_B4e-423219417166NO APICAL MERISTEM PROTEIN
1ut7_A4e-423219417166NO APICAL MERISTEM PROTEIN
1ut7_B4e-423219417166NO APICAL MERISTEM PROTEIN
3swm_A5e-423219420169NAC domain-containing protein 19
3swm_B5e-423219420169NAC domain-containing protein 19
3swm_C5e-423219420169NAC domain-containing protein 19
3swm_D5e-423219420169NAC domain-containing protein 19
3swp_A5e-423219420169NAC domain-containing protein 19
3swp_B5e-423219420169NAC domain-containing protein 19
3swp_C5e-423219420169NAC domain-containing protein 19
3swp_D5e-423219420169NAC domain-containing protein 19
4dul_A4e-423219417166NAC domain-containing protein 19
4dul_B4e-423219417166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g36670.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024316300.10.0NAC domain-containing protein 46
SwissprotQ9SQQ61e-56NAC46_ARATH; NAC domain-containing protein 46
TrEMBLA0A2K2D1I90.0A0A2K2D1I9_BRADI; Uncharacterized protein
STRINGBRADI3G36670.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147652122
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.16e-59NAC domain containing protein 46
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Oda-Yamamizo C, et al.
    Corrigendum: The NAC transcription factor ANAC046 is a positive regulator of chlorophyll degradation and senescence in Arabidopsis leaves.
    Sci Rep, 2016. 6: p. 35125
    [PMID:27759025]
  4. O'Shea C, et al.
    Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1.
    J. Biol. Chem., 2017. 292(2): p. 512-527
    [PMID:27881680]