PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g36660.2.p | ||||||||
Common Name | BRADI_3g36660, LOC100829213 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 377aa MW: 41029.2 Da PI: 6.9327 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.4 | 1.4e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEde+l+ +++++G g+W++ +++ g+ R++k+c++rw +yl Bradi3g36660.2.p 14 KGPWTSEEDEKLLAYIEEHGHGSWRALPSKAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 42 | 2.1e-13 | 67 | 131 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT..................-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..................tWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ +W++Ia +++ +Rt++++k+ w+++l Bradi3g36660.2.p 67 RGKFSLQEEQTIIQLHALLGNRninarsvlssqacflglcRWSAIATHLP-RRTDNEIKNCWNTHL 131 89************************************************.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.447 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.54E-23 | 11 | 127 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.2E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.1E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.72E-11 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.3E-22 | 65 | 135 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.359 | 66 | 135 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-11 | 66 | 133 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-12 | 67 | 131 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.39E-8 | 69 | 131 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MGRSPCCDKI GLKKGPWTSE EDEKLLAYIE EHGHGSWRAL PSKAGLQRCG KSCRLRWTNY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRNI NARSVLSSQA CFLGLCRWSA IATHLPRRTD 120 NEIKNCWNTH LKKRLAKMGI DPVTHKATNG ALIGTADIKS AKAAASLSHM AQWESARLEA 180 EGRLAQESKM RTSASTQTSL HPQPMNPSAS AASPCLDVLH AWQGAEIDLE SPTSTLTFTG 240 SNSGMLPIQV TTSLGISKSN STMWQQTCDE LEGEESEWKF LSKQQLQGLE GKERGEDIIG 300 SEQPWFTGMV GVGAGFTDML LDGSSVHGTS ECWGESSNGH AEHSNQVSGD GESKTYWSGI 360 LGMVNSELPS QPPPLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-20 | 12 | 135 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g36660.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024316299.1 | 0.0 | transcription factor MYB106 isoform X2 | ||||
Swissprot | Q9LE63 | 1e-103 | MY106_ARATH; Transcription factor MYB106 | ||||
TrEMBL | A0A2K2D1J6 | 0.0 | A0A2K2D1J6_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G36660.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5609 | 37 | 58 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01140.1 | 1e-102 | myb domain protein 106 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g36660.2.p |
Entrez Gene | 100829213 |