PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g36660.1.p | ||||||||
Common Name | BRADI_3g36660, LOC100829213 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 358aa MW: 38994.8 Da PI: 6.6433 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.5 | 1.3e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEde+l+ +++++G g+W++ +++ g+ R++k+c++rw +yl Bradi3g36660.1.p 14 KGPWTSEEDEKLLAYIEEHGHGSWRALPSKAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.7 | 7.3e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k+ w+++l Bradi3g36660.1.p 67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-RRTDNEIKNCWNTHL 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.7E-26 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.042 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.28E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.2E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.4E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.24E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.438 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.80E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MGRSPCCDKI GLKKGPWTSE EDEKLLAYIE EHGHGSWRAL PSKAGLQRCG KSCRLRWTNY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPRRT DNEIKNCWNT HLKKRLAKMG 120 IDPVTHKATN GALIGTADIK SAKAAASLSH MAQWESARLE AEGRLAQESK MRTSASTQTS 180 LHPQPMNPSA SAASPCLDVL HAWQGAEIDL ESPTSTLTFT GSNSGMLPIQ VTTSLGISKS 240 NSTMWQQTCD ELEGEESEWK FLSKQQLQGL EGKERGEDII GSEQPWFTGM VGVGAGFTDM 300 LLDGSSVHGT SECWGESSNG HAEHSNQVSG DGESKTYWSG ILGMVNSELP SQPPPLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g36660.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003574525.1 | 0.0 | transcription factor MYB106 isoform X1 | ||||
Swissprot | Q9LE63 | 1e-108 | MY106_ARATH; Transcription factor MYB106 | ||||
TrEMBL | I1I7B6 | 0.0 | I1I7B6_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G36660.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01140.1 | 1e-107 | myb domain protein 106 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g36660.1.p |
Entrez Gene | 100829213 |