PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g35850.1.p
Common NameBRADI_3g35850, LOC100841656
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 306aa    MW: 33636 Da    PI: 4.4475
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g35850.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.62.4e-1976130357
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
          Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                       k++++t+eq++ Le+ F +++++  e+++eLA++lg+  rqV vWFqNrRa++k+
  Bradi3g35850.1.p  76 KKRRLTAEQVQMLERSFGEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKN 130
                       5678*************************************************95 PP
2HD-ZIP_I/II130.18.7e-4275166192
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                       ekkrrl++eqv++LE+sF ee+kLeperK+elar+Lg+ prqvavWFqnrRAR+k+kqlE+d+++Lk+aydal+++++ L +++++Lr+++ 
  Bradi3g35850.1.p  75 EKKRRLTAEQVQMLERSFGEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKNKQLEQDFDRLKAAYDALAADHHGLLSDNDRLRAQVI 166
                       69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.67E-1870133IPR009057Homeodomain-like
PROSITE profilePS5007118.20471131IPR001356Homeobox domain
SMARTSM003891.4E-1874135IPR001356Homeobox domain
CDDcd000862.50E-1876132No hitNo description
PfamPF000461.0E-1676130IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.2E-2177138IPR009057Homeodomain-like
PRINTSPR000315.2E-6102111IPR000047Helix-turn-helix motif
PROSITE patternPS000270106129IPR017970Homeobox, conserved site
PRINTSPR000315.2E-6111127IPR000047Helix-turn-helix motif
PfamPF021833.3E-15131172IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDPGRVVFDS GLARMAAPGG GRAQMLLFGG ASNTGGFFRG VPGMDDERVV SNKRPFFTTH  60
EELLEEEYYD EQAQEKKRRL TAEQVQMLER SFGEENKLEP ERKTELARRL GMAPRQVAVW  120
FQNRRARWKN KQLEQDFDRL KAAYDALAAD HHGLLSDNDR LRAQVISLTD KLEGNETSPS  180
ATATMAQEVD QPDDHTVGAT ATVPAQQLKE DILSSGTNDS SSPVVINIAE VTNHSGESAY  240
IARDYGCTGQ YGVGALSSEE EDGGAVSDEG CSFHLPDAIL GPGLVHNVTE EEVQLGNWTS  300
WFWNE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123131RRARWKNKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g35850.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0978531e-151FP097853.1 Phyllostachys edulis cDNA clone: bphyem205k19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235125.10.0homeobox-leucine zipper protein HOX5
SwissprotQ6ZA741e-118HOX5_ORYSJ; Homeobox-leucine zipper protein HOX5
TrEMBLI1I7170.0I1I717_BRADI; Uncharacterized protein
STRINGBRADI3G35850.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26093887
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-50homeobox 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]