PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g35560.1.p
Common NameBRADI_3g35560, LOC100836054
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 275aa    MW: 29167.8 Da    PI: 9.8602
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g35560.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-1997146255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa  +++a+ +l+g
  Bradi3g35560.1.p  97 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAAVVYDQAAYRLRG 146
                       59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.47E-2996156No hitNo description
Gene3DG3DSA:3.30.730.101.0E-3197156IPR001471AP2/ERF domain
PROSITE profilePS5103222.81397154IPR001471AP2/ERF domain
SMARTSM003802.0E-3497160IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-2297156IPR016177DNA-binding domain
PRINTSPR003671.3E-1098109IPR001471AP2/ERF domain
PfamPF008472.2E-1298146IPR001471AP2/ERF domain
PRINTSPR003671.3E-10120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MAAAIDRPAD LKIRDAPAPQ MQMLQPPPFH PSLPPPFPTG GAHGYHYMGS AQGQLSPAQM  60
QYIQARLRLP PQTGLASRAQ PMKTAAARKP APAQQKLYRG VRQRHWGKWV AEIRLPRNRT  120
RLWLGTFDTA EEAAVVYDQA AYRLRGDAAR LNFPDNAASR GPLDAAVDAK LQAISHTIAA  180
KNASSKNASK GGKATPINAP AAVAAVVSSG NCSSGNSGGS AMDDGSETTS SGSASASPLA  240
QLNFGEVPWD ESESFMLTKY PSYEIDWDSL LSSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1993154163ATERF1
3gcc_A1e-1993154163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g35560.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574464.10.0ethylene-responsive transcription factor RAP2-13
SwissprotQ8H1E45e-52RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLI1I6Y10.0I1I6Y1_BRADI; Uncharacterized protein
STRINGBRADI3G35560.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-43related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]