PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g35045.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 416aa    MW: 46830.6 Da    PI: 4.7899
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g35045.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR152.71.4e-16120235290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............................tekerrtraetrtgCkakl 66 
                        Yn+YA+ +GFs++ ++s++s  ++ + k + +    g++++ + +                             +k+rr+++ ++tgCkak+
  Bradi3g35045.1.p 120 HYNAYARVMGFSIKSNTSRRSAYTNLFRKPKPMDDAVGQSSNPTGNsskarhddsssdeehvdvpnedpllfrkVVKKRRRESIKQTGCKAKM 212
                       6********************7777777777777777776666655677788899999***************9999999************* PP

              FAR1  67 kvkkekdgkwevtkleleHnHela 90 
                       +vk+  dg+wev+ ++ eHnHel 
  Bradi3g35045.1.p 213 TVKLI-DGRWEVIFFVAEHNHELI 235
                       *****.****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-14120235IPR004330FAR1 DNA binding domain
PfamPF105512.7E-18358415IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MLDLNEIPCD LDDGFGECVE PAYCTPAIPV AMHEEVGESP ATIRIAENEP LVWAPIAGDS  60
TAVADHTNVV AEDSVGVAED TTGVACDAPD NIEREIEYSS QPQEPFLGMR FDTLAGAKAH  120
YNAYARVMGF SIKSNTSRRS AYTNLFRKPK PMDDAVGQSS NPTGNSSKAR HDDSSSDEEH  180
VDVPNEDPLL FRKVVKKRRR ESIKQTGCKA KMTVKLIDGR WEVIFFVAEH NHELITKPSL  240
TKYLLSHKNI SPEEEAFLRI LDDCNLETGQ MMTLMSTFYG NGFIVPYTTK TISNFRSKIR  300
SERKGDDMAE KVSYFMAKQK EDPSFYFNVK LDEDERVELL FWVDGIARKA YKESYHNCIS  360
FDTTYLTNQY NMPFAPFIGI NRHGQSFMLG CGFMRDETAS SFDWLFQQYL DAMGG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g35045.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233530.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2K2D1960.0A0A2K2D196_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7287518
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-39FAR1-related sequence 5