PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g34930.1.p

Common Name

BRADI_3g34930, LOC100835335

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NF-YB

Protein Properties

Length: 340aa MW: 38362.1 Da PI: 5.7712

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g34930.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	69.2	7.5e-22	11	93	3	85
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 ++d lP + + +i+k++lP + ++++d+++++ ec +efi +++se++d c re++kti+++ ++ al +lGf++y+e++ + Bradi3g34930.1.p 11 KEDVSLPKSTMFKIIKEMLPPDVRVARDTQDLLVECCVEFINLLSSESNDVCSREEKKTIAPEHVIRALQDLGFKEYIEEVYA 93 67999*************************************************************************98754 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.2E-36	8	140	IPR009072	Histone-fold
SuperFamily	SSF47113	3.46E-33	12	140	IPR009072	Histone-fold
Pfam	PF00808	1.3E-17	15	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MDPMDIVGKS KEDVSLPKST MFKIIKEMLP PDVRVARDTQ DLLVECCVEF INLLSSESND 60 VCSREEKKTI APEHVIRALQ DLGFKEYIEE VYAAYEQHKL DTLDSPKASK FTGVEMSEEE 120 AVAEQQRMFA EARARMNNGA AKPKESELEP QKQSQLQLHP PAHQPSQVYA QPQQPLHAQV 180 QLHPQPQQPL HGQVQLHPQA QSQQPLHAQV QLHPQAQPQQ PLHAQVQLHP QPQQPLQPQL 240 QLQPQAQPPQ TFHPQPQLQL QPQAEPPQTV QPQLQFHPQP QQTIPPLLQP QPQQPPPQPE 300 LQLHHQSEQP TQAQLQPQAQ EPQLQLQPQS QTEHGLGSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	3e-32	12	133	12	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g34930.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF464903	1e-168	AF464903.1 Triticum aestivum repressor protein (Dr1) mRNA, complete cds.
GenBank	BT009234	1e-168	BT009234.1 Triticum aestivum clone wle1n.pk0106.g11:fis, full insert mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010235094.1	0.0	nuclear transcription factor Y subunit beta
TrEMBL	I1I6Q3	0.0	I1I6Q3_BRADI; Uncharacterized protein
STRING	BRADI3G34930.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5720	35	49
Representative plant	OGRP3449	17	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.4	7e-80	nuclear factor Y, subunit B13

Link Out ? help Back to Top
Phytozome	Bradi3g34930.1.p
Entrez Gene	100835335