PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g34850.1.p
Common NameBRADI_3g34850, LOC100822256
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 309aa    MW: 33054.9 Da    PI: 6.9469
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g34850.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.93.8e-27119179259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dg++WrKYGqK++ g+++pr+YYrCt++   gC ++k+v+r+++dp +++++Y+geH+++
  Bradi3g34850.1.p 119 EDGHSWRKYGQKDILGAKHPRGYYRCTHRnsqGCAATKQVQRADHDPALFDVVYHGEHTCR 179
                       7***************************98889**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.825113181IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.6E-28114179IPR003657WRKY domain
SuperFamilySSF1182901.16E-24117179IPR003657WRKY domain
SMARTSM007743.1E-38118180IPR003657WRKY domain
PfamPF031068.2E-27119179IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEGAMEGKGG SQGEQLVSEL CRVQGLVRQL ELHLQAPDAG SVEHCRRLAA QIVALTDRSI  60
AFVTAAAMTP RSGTASPLSD VSHQQQPFRQ PNPKKRKATA RWTSQVRVSA AGGAEGPGED  120
GHSWRKYGQK DILGAKHPRG YYRCTHRNSQ GCAATKQVQR ADHDPALFDV VYHGEHTCRA  180
SSTGAGAGSR IRPPPLDQQQ QQQHNPHAQS LLQSLSAGLT VDTASLLHAS SPMTPPSMAS  240
DSNGGLTPMS ASYPVNAFTE WPLDCDLQEV VSALTAVSGP APAMYTDDVM TYYFEFDPTF  300
GADMPSLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-22119179969OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g34850.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574419.10.0probable WRKY transcription factor 53
TrEMBLI1I6P00.0I1I6P0_BRADI; Uncharacterized protein
STRINGBRADI3G34850.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.22e-31WRKY family protein