PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g34670.6.p | ||||||||
Common Name | BRADI_3g34670, LOC100829506 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | CPP | ||||||||
Protein Properties | Length: 417aa MW: 46632 Da PI: 8.3512 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 46.3 | 8.2e-15 | 24 | 62 | 3 | 41 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+C+Ck+skClk+YC+Cfa+g++C+++C+C++C+N+ + Bradi3g34670.6.p 24 RKNCKCKNSKCLKLYCDCFASGRYCNDDCNCKNCCNDVS 62 799*********************************876 PP | |||||||
2 | TCR | 51 | 2.9e-16 | 109 | 149 | 1 | 41 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 k++kgC+Ck+s+ClkkYCeCf++++ Cse+CkC+dCkN e+ Bradi3g34670.6.p 109 KHMKGCQCKRSECLKKYCECFQSNVLCSENCKCTDCKNYES 149 589***********************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 3.7E-11 | 22 | 63 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 35.468 | 23 | 149 | IPR005172 | CRC domain |
Pfam | PF03638 | 4.1E-10 | 25 | 60 | IPR005172 | CRC domain |
SMART | SM01114 | 3.1E-17 | 109 | 150 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.7E-12 | 112 | 147 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MRMLNSRYPW SETSSESING TPRRKNCKCK NSKCLKLYCD CFASGRYCND DCNCKNCCND 60 VSHETARQDA INAVMERNPV AFMPKIGNIP RHAAQNREYR AAEGPRVGKH MKGCQCKRSE 120 CLKKYCECFQ SNVLCSENCK CTDCKNYESS EDMKEMRRMT QQHGVYVHHV QNLALKGMIG 180 PSAVLPRAAE KFSGLSVASL GRDQPINNND SSQVLSPLLT SVPTEDTESS VRLGRHGVTY 240 RTLLADIIQI EDVNVLCKVL VLVSRQAAGA FLDSGFKENT NIKKLDRAES HIPSTNHDRK 300 AVQKQHDEQL CSLGNSLIAV PLSEGRAGMP RSDPSDTWKD NRRSVSPGTQ ALMCNEQDMF 360 VHTSSVAGAI LSTTKENLSE IYIEQEKRVL TNLLDFLREL AKSGRLQEEK RSLRCH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 4e-27 | 24 | 160 | 11 | 134 | Protein lin-54 homolog |
5fd3_B | 4e-27 | 24 | 160 | 11 | 134 | Protein lin-54 homolog |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g34670.6.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010235073.1 | 0.0 | protein tesmin/TSO1-like CXC 7 isoform X1 | ||||
Refseq | XP_014755713.1 | 0.0 | protein tesmin/TSO1-like CXC 7 isoform X1 | ||||
TrEMBL | A0A2K2D151 | 0.0 | A0A2K2D151_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G34670.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 9e-55 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g34670.6.p |
Entrez Gene | 100829506 |