PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g34670.12.p
Common NameBRADI_3g34670, LOC100829506
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CPP
Protein Properties Length: 324aa    MW: 35988 Da    PI: 8.2573
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g34670.12.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR51.42.1e-161656141
                TCR  1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41
                       k++kgC+Ck+s+ClkkYCeCf++++ Cse+CkC+dCkN e+
  Bradi3g34670.12.p 16 KHMKGCQCKRSECLKKYCECFQSNVLCSENCKCTDCKNYES 56
                       589***********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163420.022156IPR005172CRC domain
SMARTSM011143.1E-171657IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-121954IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MQPRTVRAAE GPRVGKHMKG CQCKRSECLK KYCECFQSNV LCSENCKCTD CKNYESSEDM  60
KEMRRMTQQH GVYVHHVQNL ALKGMIGPSA VLPRAAEKFS GLSVASLGRD QPINNNDSSQ  120
VLSPLLTSVP TEDTESSVRL GRHGVTYRTL LADIIQIEDV NVLCKVLVLV SRQAAGAFLD  180
SGFKENTNIK KLDRAESHIP STNHDRKAVQ KQHDEQLCSL GNSLIAVPLS EGRAGMPRSD  240
PSDTWKDNRR SVSPGTQALM CNEQDMFVHT SSVAGAILST TKENLSEIYI EQEKRVLTNL  300
LDFLRELAKS GRLQEEKRSL RCH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1216368130Protein lin-54 homolog
5fd3_B1e-1216368130Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g34670.12.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235073.10.0protein tesmin/TSO1-like CXC 7 isoform X1
RefseqXP_014755713.10.0protein tesmin/TSO1-like CXC 7 isoform X1
TrEMBLA0A2K2D1600.0A0A2K2D160_BRADI; Uncharacterized protein
STRINGBRADI3G34670.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-43Tesmin/TSO1-like CXC domain-containing protein