PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g34670.10.p
Common NameBRADI_3g34670, LOC100829506
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CPP
Protein Properties Length: 389aa    MW: 42876.5 Da    PI: 9.0762
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g34670.10.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.57.5e-15171209341
                TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                        +k+C+Ck+skClk+YC+Cfa+g++C+++C+C++C+N+ +
  Bradi3g34670.10.p 171 RKNCKCKNSKCLKLYCDCFASGRYCNDDCNCKNCCNDVS 209
                        799*********************************876 PP
2TCR51.12.7e-16256296141
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                        k++kgC+Ck+s+ClkkYCeCf++++ Cse+CkC+dCkN e+
  Bradi3g34670.10.p 256 KHMKGCQCKRSECLKKYCECFQSNVLCSENCKCTDCKNYES 296
                        589***********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.7E-11169210IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.468170296IPR005172CRC domain
PfamPF036383.8E-10172207IPR005172CRC domain
SMARTSM011143.1E-17256297IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.6E-12259294IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MDKPPNHPHD SVQLDFASVF YAGKPEIAAT AAALSHALGP PRQPPHRQLM PLKVKVQSSL  60
PPWPPVLWPT AIAGKHPMPF PTPPPAKKLQ VRRSPPVLPQ DLPLSAAKLP LPGVQVQRPL  120
QQASPFLTQL LPKMEVPILL PMHATSVGVM LNSRYPWSET SSESINGTPR RKNCKCKNSK  180
CLKLYCDCFA SGRYCNDDCN CKNCCNDVSH ETARQDAINA VMERNPVAFM PKIGNIPRHA  240
AQNREYRAAE GPRVGKHMKG CQCKRSECLK KYCECFQSNV LCSENCKCTD CKNYESSEDM  300
KEMRRMTQQH GVYVHHVQNL ALKGMIGPSA VLPRAAEKFS GLSVASLGRD QPINNNDSSQ  360
VLSPLLTSVP TEDTESSVRL GRHGVTYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A8e-2717130311130Protein lin-54 homolog
5fd3_B8e-2717130311130Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g34670.10.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3721952e-50AK372195.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2147P02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235073.10.0protein tesmin/TSO1-like CXC 7 isoform X1
RefseqXP_014755713.10.0protein tesmin/TSO1-like CXC 7 isoform X1
TrEMBLA0A2K2D1400.0A0A2K2D140_BRADI; Uncharacterized protein
TrEMBLA0A2K2D1480.0A0A2K2D148_BRADI; Uncharacterized protein
STRINGBRADI3G34670.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.14e-37Tesmin/TSO1-like CXC domain-containing protein