PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g34567.4.p
Common NameLOC100827689
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 353aa    MW: 38502.7 Da    PI: 6.6266
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g34567.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.63.9e-31182240259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY+++Hnh+
  Bradi3g34567.4.p 182 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPNMLVITYTSDHNHP 240
                       699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.9E-32173242IPR003657WRKY domain
PROSITE profilePS5081133.109176242IPR003657WRKY domain
SuperFamilySSF1182901.31E-26178242IPR003657WRKY domain
SMARTSM007749.4E-38181241IPR003657WRKY domain
PfamPF031066.4E-26183240IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MADMIADLFW LSPGEQGDLS DVVRASLHPQ PEPEHYYQQL PAAAASFSYL QQPEELAEGG  60
LQLHGDHGQL GIMTDDASSK RPSSSDHKQV ISPDYSLAEM IHGMSPPQRP PGMERLQEAA  120
GDDVVPERSD RMRQHMLSMD HHPARVPAAS KPRKSQTKRV VCIPAPTAAS GRQSTSGEVV  180
PSDLWAWRKY GQKPIKGSPY PRGYYRCSSS KGCPARKQVE RSRTDPNMLV ITYTSDHNHP  240
WPTQRNALAG STRLSSSASA IAAAAKNTSS SSSSSLPTAA QGPSRNSDSI NNNDPAAAAA  300
HHRQLKQEDD LDLFADMDSL NILSSITKTH EEDSKQQQQL FDPFSSCFFD CL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B7e-25154243280Disease resistance protein RRS1
5w3x_D7e-25154243280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g34567.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9546104e-95KC954610.1 Oryza sativa Japonica Group cultivar Dongjin WRKY2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572136.10.0probable WRKY transcription factor 29 isoform X1
TrEMBLI1I6K10.0I1I6K1_BRADI; Uncharacterized protein
STRINGBRADI3G34567.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118473039
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.12e-55WRKY DNA-binding protein 35