PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g33820.1.p | ||||||||
Common Name | BRADI_3g33820, LOC100829512 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | STAT | ||||||||
Protein Properties | Length: 706aa MW: 77895.2 Da PI: 5.6352 | ||||||||
Description | STAT family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 190.4 | 2e-59 | 231 | 349 | 1 | 118 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipkl 92 l+vvl+na+g+p++kd+++vasL+yad+g+vveks ddaeapLLis++G+e++++++pl++lrGra+fklkisqLsskcdn+Lfri+f+++++ Bradi3g33820.1.p 231 LEVVLTNAFGEPANKDIQIVASLVYADTGVVVEKSrDDAEAPLLISCEGLEYPATSKPLPILRGRALFKLKISQLSSKCDNKLFRIYFSTLHV 323 79*********************************9********************************************************* PP STAT 93 kkypfleavskpirCisrsrntrsss 118 +kypflea s+pirCisr r r+++ Bradi3g33820.1.p 324 QKYPFLEASSRPIRCISRGRPIRPLG 349 *********************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.505.10 | 3.2E-4 | 601 | 673 | IPR000980 | SH2 domain |
SuperFamily | SSF55550 | 2.35E-8 | 603 | 685 | IPR000980 | SH2 domain |
PROSITE profile | PS50001 | 10.582 | 607 | 705 | IPR000980 | SH2 domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 706 aa Download sequence Send to blast |
MAAPAESGGI EDYRSLRDAR VDLDLEAARG SGEGGRARGF AVCFWLYLSG PARPSSVLLH 60 QMTAGADNKL PFLVLSEQNK LLLFPLLRLH REAPSLSSFY PWTDTTNLSS VNECPLEKWI 120 HIGCEVTENV MRLHIDGSLV AEACLCSLSR EPDNQDDAHQ ICLVGSNNMV ESYLNNIQVL 180 SVLGTIHEQY TKNPPSKLSI DFSCYDGIEV GDDGVWCIVG GKPSCRRNVI LEVVLTNAFG 240 EPANKDIQIV ASLVYADTGV VVEKSRDDAE APLLISCEGL EYPATSKPLP ILRGRALFKL 300 KISQLSSKCD NKLFRIYFST LHVQKYPFLE ASSRPIRCIS RGRPIRPLGP GKGTNSSTMD 360 EIHLVNNAQG FGRVGKVIGC SQSRDQSSVV HLHPSKFLKV EDDGTETHKT VSQTRKMVVE 420 AQSVTRTDPA ASDSDSMDAR SSWSGSDRDE VETFSDAIIF RYCLEGTSQR STFLRGAAAS 480 INVDDLITLA NQVSLYSGCS HHRNQIIISK QLLEEAADTW SIISKNNERA LWSSAVPEIM 540 AKFMVIAHST NRGLSEQDQE VLRVIAGCGD DLGRDEFDRL WNWLYPVAVS LSKDKINNLW 600 CCTEPVWIEG LITKEEAENA LRSSSELLKN PGTFVLRFPT TRSWPHPDAG SLVVTYVGFD 660 NSIHHRLLSL DASDSRAGSL QDLLLQEPEL LQLGRVDRLP TAMRN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g33820.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014755564.1 | 0.0 | SH2 domain-containing protein A isoform X2 | ||||
TrEMBL | I1I6B1 | 0.0 | I1I6B1_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G33820.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78540.1 | 1e-147 | SH2 domain protein B |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g33820.1.p |
Entrez Gene | 100829512 |