PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g33745.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 787aa    MW: 89791.3 Da    PI: 8.2955
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g33745.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR140.49.4e-13118205190
              FAR1   1 kfYneYAkevGFsvrkskskks.......krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                       +++n Y+ e GF +r  +sk         k+    t+++ vC ++g++++++++         + r+gCk ++++ +++d+ w+++++ leHn
  Bradi3g33745.1.p 118 EYFNLYSWEFGFGIRYGRSKCYkcksgprKDVVYQTMQQIVCGCQGFPNKKNTS---------SIRCGCKTMIRLLRSDDHGWYIKDCILEHN 201
                       589************8877655456676344444578999*******9987655.........9***************************** PP

              FAR1  87 Hela 90 
                       H+l+
  Bradi3g33745.1.p 202 HPLS 205
                       **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.7E-10118205IPR004330FAR1 DNA binding domain
PfamPF105515.5E-28316408IPR018289MULE transposase domain
PROSITE profilePS509669.248589625IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    Send to blast
MEAPDGSSFE LSEAFGADNF GGGFNGGNHG SQFAEEASIE EWSEVGPSAS VDEPSEDPGL  60
CTSSRRKKFE GGPAARLPVP GRAGPRESAL RGFAQRTSDN ILSVENGLCF DYLPEAYEYF  120
NLYSWEFGFG IRYGRSKCYK CKSGPRKDVV YQTMQQIVCG CQGFPNKKNT SSIRCGCKTM  180
IRLLRSDDHG WYIKDCILEH NHPLSRNNGE KLCWSSHKHI DRYTRDLVRN LCENNVPLTK  240
VYIILGNYFG SVEDIPFNKR SLENLCKQIS KEEANDDVRK TMDLFTKTRD NDPSIRTLIW  300
VNGKSKLDYQ YFGDAITFDT TYKTNLYGMP FGLFVGVNNH FQSIIFSGVL MRQETIESFE  360
WIFREFTSLV GGKPPVTILT DECRAMEVAI ERVFKNTTHR WCKWHVLKMV KEGLGSVYSK  420
NSNFKAEFHK LINYSITLME KYDLKEHHFL TPIYESRHRW AKPFFSGIFC AKMTSMQRSE  480
SANHMLKGYV PLGAAMHIFV KQYNKLIADR ISKEDSENQR TRMGGVVLKT GWPIEKHAAS  540
IYTSKMREMF SEHIFDSAAY NLIEIVPNLK YQTVHSDASR REKWSKVQYE VTISDDGGLY  600
TCECGLAEHM GMLCCHSIRV MLRLGVDKVP DAHILKRWTK NASDVLPQHL AHLQKDRGSL  660
RSESYRHASL HVAALELVNI GDKNIDCYHE VLKYLKDGKE KFGQLYQHTD GRSLQEILAI  720
TVVRADEEAA GNIIVSGQLH SAVTALVRNH PEGRPTNTRD KPSYELKRKR TKFCTFLDLL  780
CILLFY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g33745.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317341.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K2D0X40.0A0A2K2D0X4_BRADI; Uncharacterized protein
STRINGPavir.J04547.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-74FAR1-related sequence 5