PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g33440.3.p
Common NameBRADI_3g33440, LOC100831445
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 274aa    MW: 29567.3 Da    PI: 8.8464
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g33440.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.5e-1599143347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT+eE+ +++d+ kqlG+g+W+ I+r +  +Rt+ q+ s+ qk+
  Bradi3g33440.3.p  99 PWTEEEHRKFLDGLKQLGKGDWRGISRSFVPTRTATQVASHAQKH 143
                       7****************************99************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.12192148IPR017930Myb domain
SuperFamilySSF466891.29E-1794148IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-1695147IPR006447Myb domain, plants
SMARTSM007172.1E-1096146IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-1297143IPR009057Homeodomain-like
CDDcd001672.06E-1199144No hitNo description
PfamPF002499.6E-1299143IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MELQGEAAEA GTKKAAVVFR LFGVEVHGEA DEDEDGMSVE LRKSSSMPNL NLASSAADPP  60
PPAGEDEKGY ASDDDGVPAS TPQLKRRRRK ANERKKGIPW TEEEHRKFLD GLKQLGKGDW  120
RGISRSFVPT RTATQVASHA QKHFLRQTNP GKKKRRASLF DVVAVNGHDD ELPSPQSYTA  180
ATKPAPAEEI LHTDRGDVPI PSYPGGVVRG NNMQVDQPAD HMNKKKSKES MSLAAMATSR  240
LELELALASS SASILELSIA PPRRAMADGI KAL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18489KRRRRK
28495KRRRRKANERKK
38595RRRRKANERKK
4151155KKKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269|PubMed:12172034}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q7XC51}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g33440.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572080.10.0transcription factor MYBS2
SwissprotB8BI933e-75MYBS2_ORYSI; Transcription factor MYBS2
SwissprotQ7XC513e-75MYBS2_ORYSJ; Transcription factor MYBS2
TrEMBLI1I6640.0I1I664_BRADI; Uncharacterized protein
STRINGBRADI3G33440.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104643043
Representative plantOGRP1453244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.15e-31MYB family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]