PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g33410.1.p | ||||||||
Common Name | BRADI_3g33410, LOC100830219 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 273aa MW: 29061.8 Da PI: 10.2407 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60 | 3.7e-19 | 124 | 178 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Le+ F+++++++ ++++ LA++lgL rqV vWFqNrRa+ k Bradi3g33410.1.p 124 RKKLRLSKDQSAVLEDSFNQHSTLNPKQKAALARQLGLRPRQVEVWFQNRRARTK 178 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 127.8 | 4.7e-41 | 124 | 211 | 1 | 88 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rlsk+q+++LE+sF+++++L+p++K++lar+Lgl+prqv+vWFqnrRARtk+kq+E+d+eaL+r++dal+een+rL +ev++L+ Bradi3g33410.1.p 124 RKKLRLSKDQSAVLEDSFNQHSTLNPKQKAALARQLGLRPRQVEVWFQNRRARTKLKQTEVDCEALRRRCDALTEENRRLLREVQALK 211 69************************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 4.0E-17 | 10 | 96 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 3.9E-19 | 110 | 174 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.038 | 120 | 180 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.7E-17 | 122 | 184 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.68E-19 | 123 | 189 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.42E-17 | 124 | 181 | No hit | No description |
Pfam | PF00046 | 1.5E-16 | 124 | 178 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 5.8E-6 | 151 | 160 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 155 | 178 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.8E-6 | 160 | 176 | IPR000047 | Helix-turn-helix motif |
SMART | SM00340 | 2.1E-13 | 180 | 223 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 3.1E-10 | 180 | 211 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MEMTVVNGRD HLGLGLGLSL GIAGTTSSVA APQRALTGAA PTPGQKTRTA SACHEMPLFL 60 RGIDVNRAPD AGHEEEEPGA SSPDSTLSTL SGKRGRSAAG AGGREQERVS DDDEDSGSGA 120 GGSRKKLRLS KDQSAVLEDS FNQHSTLNPK QKAALARQLG LRPRQVEVWF QNRRARTKLK 180 QTEVDCEALR RRCDALTEEN RRLLREVQAL KLPLPHPQLY MRAPPLTMCP SCERVAPSGK 240 PAVAGNSTAL GSGPWGPGPV RPVFVDRPAQ RA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 128 | SRKKLRL |
2 | 172 | 180 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor involved leaf development. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. May act as a regulatory switch to specify provascular cell fate. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:10934011, ECO:0000269|PubMed:9076993}. | |||||
UniProt | Probable transcription repressor involved leaf development. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. May act as a regulatory switch to specify provascular cell fate. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:9076993}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g33410.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and sucrose in primary root apical region. By wounding in leaves. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | INDUCTION: By auxin and sucrose in primary root apical region. By wounding in leaves. {ECO:0000269|PubMed:10934011}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK366966 | 1e-131 | AK366966.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2049C06. | |||
GenBank | AK368549 | 1e-131 | AK368549.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2075M23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003572077.1 | 0.0 | homeobox-leucine zipper protein HOX1 | ||||
Swissprot | Q40691 | 2e-68 | HOX1_ORYSI; Homeobox-leucine zipper protein HOX1 | ||||
Swissprot | Q7XC54 | 2e-68 | HOX1_ORYSJ; Homeobox-leucine zipper protein HOX1 | ||||
TrEMBL | A0A0Q3JI53 | 0.0 | A0A0Q3JI53_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G33410.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2587 | 38 | 89 | Representative plant | OGRP196 | 16 | 156 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44910.1 | 3e-56 | homeobox-leucine zipper protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g33410.1.p |
Entrez Gene | 100830219 |