PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g33355.1.p
Common NameBRADI_3g33355, LOC100821224
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 264aa    MW: 27943.2 Da    PI: 4.6074
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g33355.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.5e-1883132255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr +  +g+Wv+eIr+p++   + r++lg+f ta++Aa+a++aa+++++g
  Bradi3g33355.1.p  83 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTADMAARAHDAAALAIKG 132
                       69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575126No hitNo description
Gene3DG3DSA:3.30.730.102.1E-3083142IPR001471AP2/ERF domain
PROSITE profilePS5103222.65583141IPR001471AP2/ERF domain
SMARTSM003801.8E-3283147IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-1983142IPR016177DNA-binding domain
PfamPF008472.3E-1283132IPR001471AP2/ERF domain
PRINTSPR003673.3E-108495IPR001471AP2/ERF domain
CDDcd000184.44E-1684143No hitNo description
PRINTSPR003673.3E-10106122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MAPRELQETS SSSSSTSYTT SSTASCASTV TDSSSSPSSP AANATAPAAG KKRLEAEMEM  60
EIMEEGEARK KKRKRSSEGK HPTYRGVRMR AWGKWVSEIR EPRKKSRIWL GTFPTADMAA  120
RAHDAAALAI KGPARAALNF PDLAKLLPRA ASPAPKDVQA AAALAAAFTT SSPSPSEEDG  180
VVGGEEEEDA PAPAPAPPKN EEAAAAAAPL RGDEEELQLF DLPDLLLDIR DGFGFSSAMW  240
APLPDVDEAV NAELRLEEPL LWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-16811411272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15072KKRLEAEMEMEIMEEGEARKKKR
26874RKKKRKR
37075KKRKRS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g33355.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0798741e-108AC079874.21 Oryza sativa chromosome 10 BAC OSJNBa0042H09 genomic sequence, complete sequence.
GenBankAC0798901e-108AC079890.13 Oryza sativa chromosome 10 BAC OSJNBb0089A17 genomic sequence, complete sequence.
GenBankAP0149661e-108AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614793.13e-70ethylene-responsive transcription factor ERF038
SwissprotQ8LBQ76e-50ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLI1I6530.0I1I653_BRADI; Uncharacterized protein
STRINGBRADI3G33355.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.17e-25ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]