PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g33170.5.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 348aa    MW: 36941 Da    PI: 6.3506
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g33170.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-11265297537
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS- CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskK 37 
                       hne Er+RRdriN+++++L++l+P++sk+  kK
  Bradi3g33170.5.p 265 HNESERKRRDRINQKMQTLQKLVPNSSKGEEKK 297
                       *************************87666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-9258295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.966260332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-10264296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-9265297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.52E-8265293No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MNNQCVPSWD LEDTAGLNQR SASGPAHQPR GLAAPVVAVP MPEPDQYDEV AELTWEKGNI  60
FWQGLLSRPA PIKYPPPSAA APMHASPGDR REQTLEAVVG EAAARSSSHS HHLAPNWLAV  120
GVDQVAAGVV PCAAGDADEA EEDARVRNDN KRARRLQACA ASQGSAAAPG AARDSPTLLT  180
MEPCGFTATT TNNSTSLDLD HGSPEETTEN TSFGGGAASD SRYFSRRSQR DGLCDEAETV  240
VIKEEPPMRM RSSISTKRSR AAAIHNESER KRRDRINQKM QTLQKLVPNS SKGEEKKSGG  300
IMTIIQQHTC VGGSQASDAV PVGGKVQGTG HLFFDSMGLG AMQAHMP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268273ERKRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g33170.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234992.10.0transcription factor UNE10
TrEMBLA0A2K2D0R90.0A0A2K2D0R9_BRADI; Uncharacterized protein
STRINGBRADI3G33170.11e-171(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-17bHLH family protein