PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g33170.2.p | ||||||||
Common Name | BRADI_3g33170, LOC100842568 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 453aa MW: 48710 Da PI: 6.5155 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.7 | 6.6e-16 | 265 | 310 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hne Er+RRdriN+++++L++l+P++ K +Ka++L +++e++k+Lq Bradi3g33170.2.p 265 HNESERKRRDRINQKMQTLQKLVPNS-----SKTDKASMLDEVIEHLKQLQ 310 *************************8.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 17.422 | 260 | 309 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.32E-19 | 263 | 329 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-17 | 265 | 318 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-13 | 265 | 310 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.09E-17 | 265 | 314 | No hit | No description |
SMART | SM00353 | 3.6E-18 | 266 | 315 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MNNQCVPSWD LEDTAGLNQR SASGPAHQPR GLAAPVVAVP MPEPDQYDEV AELTWEKGNI 60 FWQGLLSRPA PIKYPPPSAA APMHASPGDR REQTLEAVVG EAAARSSSHS HHLAPNWLAV 120 GVDQVAAGVV PCAAGDADEA EEDARVRNDN KRARRLQACA ASQGSAAAPG AARDSPTLLT 180 MEPCGFTATT TNNSTSLDLD HGSPEETTEN TSFGGGAASD SRYFSRRSQR DGLCDEAETV 240 VIKEEPPMRM RSSISTKRSR AAAIHNESER KRRDRINQKM QTLQKLVPNS SKTDKASMLD 300 EVIEHLKQLQ AQVQMMSRMG SMMMPMGMAM APPLQMSVMA NMAQMAQMAQ MGLGMMNMAA 360 QPAAYPGLAS PMNIMQPPNP FVPIQPWDAA GDRQKQPAGI AAVPAYSAFL ACQAAAQQQQ 420 QAQPNGMEAY NRMVAMYQKL SQQQSQPGNS KQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 268 | 273 | ERKRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00034 | PBM | Transfer from AT4G00050 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g33170.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010234992.1 | 0.0 | transcription factor UNE10 | ||||
TrEMBL | A0A0Q3HWD8 | 0.0 | A0A0Q3HWD8_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G33170.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7474 | 31 | 40 | Representative plant | OGRP8003 | 10 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 1e-34 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g33170.2.p |
Entrez Gene | 100842568 |