PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g32170.3.p | ||||||||
Common Name | BRADI_3g32170 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB_related | ||||||||
Protein Properties | Length: 211aa MW: 23088.3 Da PI: 8.7616 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.3 | 4.6e-10 | 29 | 72 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g +T E+ ++++ + G+ W+ Ia ++ gRt+ +k++w++ Bradi3g32170.3.p 29 GHFTLAEETIILEMYSKRGSC-WSVIATQLP-GRTDLAVKNYWNST 72 6799*****************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.263 | 1 | 22 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-4 | 6 | 22 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.8E-19 | 8 | 77 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.8E-19 | 23 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.687 | 23 | 77 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-8 | 27 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-9 | 29 | 72 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.29E-7 | 31 | 73 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MSWIAGLQRC GRSCRSRWLN YLRPGLKHGH FTLAEETIIL EMYSKRGSCW SVIATQLPGR 60 TDLAVKNYWN STLAKRLPGA RTTARRRRSR PSSSTTSDAR KPDEIALVAH DDESATTGSP 120 CHATVVEARP LLAAATVSAV KEEVSGAARA ERKPAVAREN APPRRGDQAG AMDMVCAPAS 180 PMPLAIMEPD LPWLAGFDEI DSFLPWFDDW * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-16 | 9 | 77 | 40 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g32170.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014756015.1 | 1e-153 | transcription factor MYB87 | ||||
TrEMBL | A0A2K2D0I4 | 1e-152 | A0A2K2D0I4_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G32170.1 | 1e-118 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12228 | 26 | 38 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56110.1 | 1e-30 | myb domain protein 103 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g32170.3.p |