PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g32040.3.p
Common NameBRADI_3g32040, LOC100828705
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TALE
Protein Properties Length: 607aa    MW: 64160.1 Da    PI: 6.9749
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g32040.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.26.8e-093493861954
                       HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  Bradi3g32040.3.p 349 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 386
                       554459******************************88 PP
2BELL87.81.2e-28210279271
              BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                        +elq+ kakL s+leeVd+rY++y+eq+++v++sFea+ag  +a+ Yt+ A ++iS+hFr L+d +a q
  Bradi3g32040.3.p 210 AAELQRLKAKLYSMLEEVDRRYRRYREQMRAVAGSFEAAAGRAAAAAYTRTAARTISKHFRTLRDGVAAQ 279
                       5799***************************************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.0E-40145278IPR006563POX domain
PfamPF075267.5E-40151276IPR006563POX domain
PROSITE profilePS5007112.26327390IPR001356Homeobox domain
SMARTSM003892.5E-9330394IPR001356Homeobox domain
CDDcd000862.47E-12330391No hitNo description
SuperFamilySSF466893.42E-17331397IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.2E-28333396IPR009057Homeodomain-like
PfamPF059208.0E-18347386IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MAHDHHPSLA GYADYFAAAG SGGATLVPEV DAAGEHDMYG GVGLHHHHQS LPSGVEMFGL  60
RGFMAPAAAV SVAQSKQVAV DEDDGSSAAI SFFRSEQQQR QMMSQLQQAP LSLSLHGPPP  120
DAASASSFML QHQFGGEMAW QLQGAGAGWH LRGSRFLLPT QQLLQEFCSI PAETTASKAP  180
KRPEQEENPN GGGSSASWPA PSAQIQATDA AELQRLKAKL YSMLEEVDRR YRRYREQMRA  240
VAGSFEAAAG RAAAAAYTRT AARTISKHFR TLRDGVAAQA RAVRVALGEK VDAAAPPGMT  300
KGETPRLRAL DQCLRQHKAY QSGVLESQPW RPQRGLPERA VSVLRAWLFE HFLHPYPSDV  360
DKHILARQTG LSRSQVSNWF INARVRLWKP MVEEMYAEEM KDKEDGSGGA GEQYSAQLQA  420
SSGDQLLGNH NTAAAGSYGG GGGEQKPTRA QLHDAGSLAS VVSIGRVHQQ QQSQSLDFGM  480
STMDDDGFDA YDAGGGVHGF GGHGGAVSLT LGLQHQHADP SHRQHHHGGV NVAAFASASP  540
STSSAAAQGG GAAEFLFMSG EQHLGGQFGA PGGMGGGADP AASHYHHRGG VLGATAGFHL  600
LRDLAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A6e-17336393158Homeobox protein Meis1
4xrs_B6e-17336393158Homeobox protein Meis1
5bng_A7e-17336394159Homeobox protein Meis2
5bng_B7e-17336394159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g32040.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3584090.0AK358409.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1076A02.
GenBankAK3591120.0AK359112.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1089L06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572007.10.0BEL1-like homeodomain protein 4
TrEMBLI1I5P40.0I1I5P4_BRADI; Uncharacterized protein
STRINGBRADI3G32040.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38143764
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.34e-70BEL1-like homeodomain 4